RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ATP2B3Q16720 1220 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 UTP14CQ5TAP6 766 aaKnown RBP4.66□□□□□ -1.66
NUP54-212ENST00000513248 PPP1R32Q7Z5V6 425 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 SRGAP1Q7Z6B7 1085 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 ARHGEF19Q8IW93 802 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 CPEB3Q8NE35 698 aaKnown RBP4.66□□□□□ -1.66
NUP54-212ENST00000513248 TMIEQ8NEW7 156 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 ANKS1AQ92625 1134 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 SCAMP4Q969E2 229 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 SLC35A4Q96G79 324 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 LRIG1Q96JA1 1093 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 ADAM2Q99965 735 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 B3GNT5Q9BYG0 378 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 DPH1Q9BZG8 443 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 TMEM74BQ9NUR3 256 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 ANKFY1Q9P2R3 1169 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 MAP3K2Q9Y2U5 619 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 ALS2Q96Q42 1657 aa4.66□□□□□ -1.66
NUP54-212ENST00000513248 AATKQ6ZMQ8 1374 aa4.65□□□□□ -1.66
NUP54-212ENST00000513248 NINLQ9Y2I6 1382 aa4.65□□□□□ -1.66
NUP54-212ENST00000513248 CRB1P82279 1406 aa4.65□□□□□ -1.66
NUP54-212ENST00000513248 EDC4Q6P2E9 1401 aaKnown RBP4.65□□□□□ -1.66
NUP54-212ENST00000513248 TOPAZ1Q8N9V7 1692 aa4.65□□□□□ -1.66
NUP54-212ENST00000513248 A0A1B0GTW7 788 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 MYO1FO00160 1098 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 AGFG2O95081 481 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 MYBP10242 640 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 FGFR4P22455 802 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 FDXRP22570 491 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 SMARCA1P28370 1054 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 GPSM2P81274 684 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 GUCY1B3Q02153 619 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 CCDC142Q17RM4 750 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 MAEAQ7L5Y9 396 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 ARHGEF25Q86VW2 580 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 VRK3Q8IV63 474 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 MAPKAPK5Q8IW41 473 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 TMEM132CQ8N3T6 1108 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 MARS2Q96GW9 593 aaKnown RBP4.65□□□□□ -1.67
NUP54-212ENST00000513248 NT5C1BQ96P26 610 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 ZSWIM1Q9BR11 485 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 TLR10Q9BXR5 811 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 PACSIN1Q9BY11 444 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 C22orf23Q9BZE7 217 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 RNPEPQ9H4A4 650 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 SERHL2Q9H4I8 314 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 CTTNBP2NLQ9P2B4 639 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 AGAP1Q9UPQ3 857 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 ABCA3Q99758 1704 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.65□□□□□ -1.67
NUP54-212ENST00000513248 NWD2Q9ULI1 1742 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 WDR17Q8IZU2 1322 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 A0A1W2PP64 1363 aa4.65□□□□□ -1.67
NUP54-212ENST00000513248 PHRF1Q9P1Y6 1649 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 CPSF1Q10570 1443 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 COL5A2P05997 1499 aaPredicted RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 GRID2IPA4D2P6 1211 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 UNC119BA6NIH7 251 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 H3BUI4 141 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 TPP1O14773 563 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 DNAJB5O75953 348 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 ZFPL1O95159 310 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 AHSGP02765 367 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 GJB1P08034 283 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 NPR1P16066 1061 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 RHCEP18577 417 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 PROZP22891 400 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 YY1P25490 414 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 ZEB1P37275 1124 aaPredicted RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 TOB1P50616 345 aaPredicted RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 RHDQ02161 417 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 FSTL1Q12841 308 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 RESTQ13127 1097 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 FGL2Q14314 439 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 HLTFQ14527 1009 aaKnown RBP eCLIP4.64□□□□□ -1.67
NUP54-212ENST00000513248 EZH2Q15910 746 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 ARHGAP29Q52LW3 1261 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 ARMC6Q6NXE6 501 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 PRIMA1Q86XR5 153 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 WDR75Q8IWA0 830 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 CAMKK1Q8N5S9 505 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 CELF5Q8N6W0 485 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 TBC1D15Q8TC07 691 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 NACC2Q96BF6 587 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 BOD1Q96IK1 185 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 MED15Q96RN5 788 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 TESK2Q96S53 571 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 WDR11Q9BZH6 1224 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 ZMAT3Q9HA38 289 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 GNL3LQ9NVN8 582 aaKnown RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 ETAA1Q9NY74 926 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 CFAP97Q9P2B7 532 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 FEZ2Q9UHY8 353 aaPredicted RBP4.64□□□□□ -1.67
NUP54-212ENST00000513248 KCNE5Q9UJ90 142 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 MED16Q9Y2X0 877 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 PCDHA1Q9Y5I3 950 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 NRKQ7Z2Y5 1582 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 ANKRD36BQ8N2N9 1353 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 CCDC7Q96M83 1385 aa4.64□□□□□ -1.67
NUP54-212ENST00000513248 CAMTA1Q9Y6Y1 1673 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms