RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 VSTM1Q6UX27 236 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 TMC6Q7Z403 805 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 SCN4BQ8IWT1 228 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 ZDHHC7Q9NXF8 308 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 TSPAN16Q9UKR8 245 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 MYO6Q9UM54 1294 aa31.4■■■□□ 2.62
LIMCH1-211ENST00000509638 LRG1P02750 347 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 ATF6P18850 670 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 LTBRP36941 435 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 GPR15P49685 360 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 TRIM14Q14142 442 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 C12orf76Q8N812 135 aaPredicted RBP31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 CPLX3Q8WVH0 158 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 GRPEL1Q9HAV7 217 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 WDR3Q9UNX4 943 aaKnown RBP eCLIP31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 GREB1Q4ZG55 1949 aa31.39■■■□□ 2.62
LIMCH1-211ENST00000509638 HOXA9P31269 272 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 GRIK1P39086 918 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 ALDH1A3P47895 512 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 PDE6CP51160 858 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 RTL10Q7L3V2 364 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 DMAP1Q9NPF5 467 aaPredicted RBP31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 CAPN11Q9UMQ6 739 aa31.39■■■□□ 2.61
LIMCH1-211ENST00000509638 F8VP50 259 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 SSTR3P32745 418 aaPredicted RBP31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 BPIFB4P59827 614 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 ARID5AQ03989 594 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 PLD1Q13393 1074 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 DDR2Q16832 855 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 HESX1Q9UBX0 185 aa31.38■■■□□ 2.61
LIMCH1-211ENST00000509638 TRIM66O15016 1216 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 CCL16O15467 120 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 ADCY5O95622 1261 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 HNRNPA1P09651 372 aaKnown RBP eCLIP31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 CYP11B1P15538 503 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 NPR3P17342 541 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 CASP14P31944 242 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 RPL10AP62906 217 aaKnown RBP31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 STILQ15468 1287 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 RARS2Q5T160 578 aaKnown RBP31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 SDHAF4Q5VUM1 108 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 SYCE2Q6PIF2 218 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 LCLAT1Q6UWP7 414 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 TMC5Q6UXY8 1006 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 CLEC20AQ6ZU45 233 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 TTC30AQ86WT1 665 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 EPS8L1Q8TE68 723 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 ZNF606Q8WXB4 792 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 APOL5Q9BWW9 433 aa31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 UBE2ZQ9H832 354 aaPredicted RBP31.37■■■□□ 2.61
LIMCH1-211ENST00000509638 M0QYV0 167 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 MED7O43513 233 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 HOXB8P17481 243 aaPredicted RBP31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 BCAT1P54687 386 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 CNGA2Q16280 664 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 E4F1Q66K89 784 aaPredicted RBP31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 STKLD1Q8NE28 680 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 ZNF397Q8NF99 534 aaPredicted RBP31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 FEZF2Q8TBJ5 459 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 GPR152Q8TDT2 470 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 KCNK16Q96T55 309 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 SMOQ99835 787 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 LUC7L2Q9Y383 392 aaKnown RBP31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 DOCK6Q96HP0 2047 aa31.36■■■□□ 2.61
LIMCH1-211ENST00000509638 CCDC195A0A1B0GUA6 201 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 BEST1O76090 585 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 MICAL2O94851 1124 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 ANXA13P27216 316 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 MAP3K7CLP57077 242 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 ZBED6P86452 979 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 NOP9Q86U38 636 aaKnown RBP31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 FMNL3Q8IVF7 1028 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 ANKRD52Q8NB46 1076 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 MSLNLQ96KJ4 702 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 DUSP16Q9BY84 665 aa31.35■■■□□ 2.61
LIMCH1-211ENST00000509638 FERP16591 822 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 KCNA5P22460 613 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 EPHB3P54753 998 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 VEPH1Q14D04 833 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 CLUL1Q15846 466 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 SFMBT2Q5VUG0 894 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 ZMIZ2Q8NF64 920 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 CMASQ8NFW8 434 aaPredicted RBP31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 GIPC2Q8TF65 315 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 ZNF707Q96C28 371 aaPredicted RBP31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 C8orf48Q96LL4 319 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 CSNK1G1Q9HCP0 422 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 NOCTQ9UK39 431 aaKnown RBP31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 MYO16Q9Y6X6 1858 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 ZNF638Q14966 1978 aaKnown RBP31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 H3BQ06 376 aaPredicted RBP31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 TPM1P09493 284 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 ASIC2Q16515 512 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 PRKD2Q9BZL6 878 aa31.34■■■□□ 2.61
LIMCH1-211ENST00000509638 XYLBO75191 536 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 CFHP08603 1231 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 BST2Q10589 180 aaKnown RBP31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 TAF3Q5VWG9 929 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 ELMOD1Q8N336 334 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 UBA3Q8TBC4 463 aa31.33■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 263.8 ms