RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 SLC12A4Q9UP95 1085 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TMED5Q9Y3A6 229 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RPAP1Q9BWH6 1393 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 MED23Q9ULK4 1368 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 A0A087X0B3 334 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ST18O60284 1047 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ATP5HO75947 161 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CSH1P0DML2 217 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CSH2P0DML3 217 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TNNI1P19237 187 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 GIPRP48546 466 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 PMS2P11Q13670 270 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ZACNQ401N2 412 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SGO2Q562F6 1265 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 INTS5Q6P9B9 1019 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 C16orf59Q7L2K0 433 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SLFN11Q7Z7L1 901 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RALYLQ86SE5 291 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 UNC5BQ8IZJ1 945 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 HMGB4Q8WW32 186 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ZKSCAN4Q969J2 545 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 KAZALD1Q96I82 304 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SPZ1Q9BXG8 430 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TOR3AQ9H497 397 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 AGO4Q9HCK5 861 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 EMC7Q9NPA0 242 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 BRD7Q9NPI1 651 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ATXN10Q9UBB4 475 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TRPC5Q9UL62 973 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RUVBL1Q9Y265 456 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 PCDHA1Q9Y5I3 950 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CCDC154A6NI56 674 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TEX28O15482 410 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 STX6O43752 255 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 MPOP05164 745 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RAC2P15153 192 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ENDOUP21128 410 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 PSMA3P25788 255 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TLX1P31314 330 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CETN2P41208 172 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CSNK2BP67870 215 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 FRG1Q14331 258 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SUZ12Q15022 739 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 FAXCQ5TGI0 409 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ATG16L1Q676U5 607 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 DESI1Q6ICB0 168 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 NEK5Q6P3R8 708 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ZNF783Q6ZMS7 281 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ERMP1Q7Z2K6 904 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SLC22A8Q8TCC7 542 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TUBGCP5Q96RT8 1024 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 BOCQ9BWV1 1114 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 GALNT8Q9NY28 637 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 AIPL1Q9NZN9 384 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ZNF69Q9UC07 566 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CYTH4Q9UIA0 394 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 INTS6Q9UL03 887 aaKnown RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 LRFN2Q9ULH4 789 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CBY1Q9Y3M2 126 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 PCDHA13Q9Y5I0 950 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SLC12A8A0AV02 714 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CCDC151A5D8V7 595 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 PIK3R2O00459 728 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CSF2RAP15509 400 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RHOQP17081 205 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 RXRBP28702 533 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 GRK3P35626 688 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CTSWP56202 376 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 HERVK_113P62684 666 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 ERVK-24P63145 666 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 IRX1P78414 480 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CCDC122Q5T0U0 273 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 C1orf53Q5VUE5 145 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TRAF7Q6Q0C0 670 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CLEC17AQ6ZS10 378 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 NEK10Q6ZWH5 1172 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 FGD2Q7Z6J4 655 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 CNGA4Q8IV77 575 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 TRAPPC9Q96Q05 1148 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 MMRN2Q9H8L6 949 aa4.11□□□□□ -1.75
NEDD4-209ENST00000508871 SUCLA2Q9P2R7 463 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-209ENST00000508871 A0A1W2PP55 124 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 ACKR2O00590 384 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 KLHL18O94889 574 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 ATP6V1C1P21283 382 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 POU4F1Q01851 419 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 LRP8Q14114 963 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 IKBKEQ14164 716 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 GRIN2CQ14957 1233 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 EFTUD2Q15029 972 aaKnown RBP eCLIP4.1□□□□□ -1.752e-7■■■■□ 21.3
NEDD4-209ENST00000508871 DHCR24Q15392 516 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 PCID2Q5JVF3 399 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 INTS8Q75QN2 995 aaKnown RBP4.1□□□□□ -1.75
NEDD4-209ENST00000508871 ZNF804AQ7Z570 1209 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 DNAAF5Q86Y56 855 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 CFAP206Q8IYR0 622 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 AFAP1L2Q8N4X5 818 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 ZNF558Q96NG5 402 aa4.1□□□□□ -1.75
NEDD4-209ENST00000508871 TM6SF1Q9BZW5 370 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms