RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 AMPD3Q01432 767 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 USP4Q13107 963 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 ZNF77Q15935 545 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 SNRNP35Q16560 246 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 NAIF1Q69YI7 327 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CNNM4Q6P4Q7 775 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 C4orf50Q6ZRC1 276 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CEP68Q76N32 757 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 LIMS2Q7Z4I7 341 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 WDR5BQ86VZ2 330 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 NELFCDQ8IXH7 590 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CPA6Q8N4T0 437 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 IQUBQ8NA54 791 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 RDH13Q8NBN7 331 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 ZNF507Q8TCN5 953 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CYP2S1Q96SQ9 504 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 KIAA1586Q9HCI6 787 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 CRTAC1Q9NQ79 661 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 AGPAT3Q9NRZ7 376 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 GCNT4Q9P109 453 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 MAGEC2Q9UBF1 373 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 WNT6Q9Y6F9 365 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 DMXL1Q9Y485 3027 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 UBE4BO95155 1302 aa12.35□□□□□ -0.43
HMGCS1-204ENST00000507293 C2orf78A6NCI8 922 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CLIC2O15247 247 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 LRP3O75074 770 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 RNF40O75150 1001 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 PDGFRBP09619 1106 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 DLATP10515 647 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 BDNFP23560 247 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CASP1P29466 404 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 IFNAR2P48551 515 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 PXNP49023 591 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CYP2J2P51589 502 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 AMPD2Q01433 879 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CYP27A1Q02318 531 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 PSMD6Q15008 389 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 MAPRE1Q15691 268 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 FOXD4L6Q3SYB3 417 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 FOXD4L3Q6VB84 417 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 UNC13DQ70J99 1090 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 TRAPPC11Q7Z392 1133 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 FAM160A2Q8N612 972 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 ARL14EPQ8N8R7 260 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 FSIP1Q8NA03 581 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 SCFD1Q8WVM8 642 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CCDC127Q96BQ5 260 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 MMS19Q96T76 1030 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 CGRRF1Q99675 332 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 C7orf25Q9BPX7 421 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 MRPL45Q9BRJ2 306 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 RTKNQ9BST9 563 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 BLZF1Q9H2G9 400 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 ECT2Q9H8V3 914 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 FBRSL1Q9HCM7 1045 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 SEMA4GQ9NTN9 838 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 POLR3BQ9NW08 1133 aaPredicted RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 DUS2Q9NX74 493 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 NME7Q9Y5B8 376 aa12.34□□□□□ -0.43
HMGCS1-204ENST00000507293 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 POLR2DO15514 142 aaKnown RBP12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 ATG13O75143 517 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 TNNI1P19237 187 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 ANXA13P27216 316 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 GJA4P35212 333 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 GRIK1P39086 918 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 GALK1P51570 392 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 CYP24A1Q07973 514 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 EHHADHQ08426 723 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 KCNB1Q14721 858 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 MDH1BQ5I0G3 518 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 VSTM1Q6UX27 236 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 PRR23CQ6ZRP0 262 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 XXYLT1Q8NBI6 393 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 SH3RF2Q8TEC5 729 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 OSCP1Q8WVF1 389 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 ATP2A3Q93084 1043 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 PCED1BQ96HM7 432 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 SPATA17Q96L03 361 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 FNBP1Q96RU3 617 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 P2RY13Q9BPV8 354 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 SNX25Q9H3E2 840 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 MAGEF1Q9HAY2 307 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 SLC8A2Q9UPR5 921 aa12.33□□□□□ -0.44
HMGCS1-204ENST00000507293 MYH10P35580 1976 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 DCDC2BA2VCK2 349 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 TRIM66O15016 1216 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 CST3P01034 146 aaPredicted RBP12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 HDCP19113 662 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 DRD1P21728 446 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 USP46P62068 366 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 TNNC1P63316 161 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 CSRP2Q16527 193 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 EML3Q32P44 896 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 DENND5BQ6ZUT9 1274 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 HS2ST1Q7LGA3 356 aa12.32□□□□□ -0.44
HMGCS1-204ENST00000507293 OR6B3Q8NGW1 331 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms