RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SYT15Q9BQS2 421 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 TMLHEQ9NVH6 421 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 OBSL1O75147 1896 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 MYMKA6NI61 221 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 GDF9O60383 454 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 DGKEP52429 567 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 SF3A2Q15428 464 aaKnown RBP22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 ZNF77Q15935 545 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 WDR44Q5JSH3 913 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 DENND5BQ6ZUT9 1274 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 NUDT18Q6ZVK8 323 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 SH3RF2Q8TEC5 729 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 LRRC15Q8TF66 581 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 HHIPQ96QV1 700 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 FNBP1Q96RU3 617 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 MMS19Q96T76 1030 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 MTMR12Q9C0I1 747 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 SNX25Q9H3E2 840 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 CUEDC2Q9H467 287 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 FBXO2Q9UK22 296 aaPredicted RBP22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 ARHGAP26Q9UNA1 814 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 CLIC4Q9Y696 253 aa22.5■■□□□ 1.19
SQSTM1-210ENST00000506042 GABRDO14764 452 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 TRIM21P19474 475 aaKnown RBP22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 GPR15P49685 360 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 CYP27A1Q02318 531 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 WDR49Q8IV35 697 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 DNAJC19Q96DA6 116 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 SLITRK1Q96PX8 696 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 ZSCAN16Q9H4T2 348 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 PDE11AQ9HCR9 933 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 INTS13Q9NVM9 706 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 SPAG17Q6Q759 2223 aa22.49■■□□□ 1.19
SQSTM1-210ENST00000506042 GOLGA8IPA6NC78 632 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 GOLGA8JA6NMD2 632 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 FAM163BP0C2L3 166 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 DPP6P42658 865 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 CREB5Q02930 508 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 BYSLQ13895 437 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 PLK5Q496M5 336 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 HSF5Q4G112 596 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 SDHAF4Q5VUM1 108 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 ARL14EPQ8N8R7 260 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 STKLD1Q8NE28 680 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 CHFRQ96EP1 664 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 SPACA7Q96KW9 195 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 TNMDQ9H2S6 317 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 PCIF1Q9H4Z3 704 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 WNT6Q9Y6F9 365 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 MORC2Q9Y6X9 1032 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 ATP8B3O60423 1300 aa22.48■■□□□ 1.19
SQSTM1-210ENST00000506042 SNRPFP62306 86 aaKnown RBP22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 TNNC1P63316 161 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 CEBPZQ03701 1054 aaKnown RBP22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 SOWAHAQ2M3V2 549 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 EML3Q32P44 896 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 PLA2G2CQ5R387 149 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 TDRD10Q5VZ19 366 aaKnown RBP22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 PKN3Q6P5Z2 889 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 CBWD1Q9BRT8 395 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 C2orf42Q9NWW7 574 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 NCOR2Q9Y618 2525 aa22.47■■□□□ 1.19
SQSTM1-210ENST00000506042 FRMD3A2A2Y4 597 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 CLSTN1O94985 981 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 CAVIN2O95810 425 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 ADH1CP00326 375 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 KCNA1Q09470 495 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 FAM171BQ6P995 826 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 USP49Q70CQ1 688 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 HS2ST1Q7LGA3 356 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 PDZD8Q8NEN9 1154 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 CYP2S1Q96SQ9 504 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 EDEM2Q9BV94 578 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 ELOVL4Q9GZR5 314 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 TBC1D14Q9P2M4 693 aa22.46■■□□□ 1.19
SQSTM1-210ENST00000506042 OTOL1A6NHN0 477 aaPredicted RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 KHNYNO15037 678 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 EIF3DO15371 548 aaKnown RBP eCLIP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 ZBTB24O43167 697 aaPredicted RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 CD2BP2O95400 341 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 TNNI1P19237 187 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 WARSP23381 471 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 BDNFP23560 247 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 MRPS21P82921 87 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 TRPC3Q13507 836 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 STK38Q15208 465 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 MYLPFQ96A32 169 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 PKMYT1Q99640 499 aa22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 POLMQ9NP87 494 aaPredicted RBP22.45■■□□□ 1.18
SQSTM1-210ENST00000506042 TADA3O75528 432 aa22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 UBE4BO95155 1302 aa22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 ABL1P00519 1130 aa22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 GNL1P36915 607 aaPredicted RBP22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 EIF2DP41214 584 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 HELZP42694 1942 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 NOP14P78316 857 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 SHC2P98077 582 aa22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 CUL4AQ13619 759 aa22.44■■□□□ 1.18
SQSTM1-210ENST00000506042 SLC39A14Q15043 492 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 188.3 ms