RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 LRGUKQ96M69 825 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 GAL3ST1Q99999 423 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 GCOM2Q9BZD3 368 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 PUS3Q9BZE2 481 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 TMEM117Q9H0C3 514 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 DNAJC25Q9H1X3 360 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 FAM204AQ9H8W3 233 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 TRIM45Q9H8W5 580 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CHRAC1Q9NRG0 131 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 EURLQ9NYK6 297 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 Q9Y3F1 56 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 ZFP37Q9Y6Q3 630 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 FAM47DPA6NHR8 397 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 XPO1O14980 1071 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 TTI1O43156 1089 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 IL33O95760 270 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 HSPD1P10809 573 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CD52P31358 61 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 HNRNPH1P31943 449 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 PAFAH1B1P43034 410 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 GNGT1P63211 74 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 USP4Q13107 963 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CYLC2Q14093 348 aaPredicted RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 TRIP6Q15654 476 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 PABPC1LQ4VXU2 614 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 RGS9BPQ6ZS82 235 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RNASE11Q8TAA1 199 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CDKL2Q92772 493 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 FAM149B1Q96BN6 582 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 XAGE2Q96GT9 111 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 INTS4Q96HW7 963 aaKnown RBP5.37□□□□□ -1.55
USP54-216ENST00000498143 CAPZA3Q96KX2 299 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CORO1BQ9BR76 489 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 CARD14Q9BXL6 1004 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 POMKQ9H5K3 350 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP54-216ENST00000498143 FANCLQ9NW38 375 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 IMPACTQ9P2X3 320 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 MTRRQ9UBK8 725 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 APPL1Q9UKG1 709 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 TRAF3IP3Q9Y228 551 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 PCDHGB7Q9Y5F8 929 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 RAI2Q9Y5P3 530 aa5.37□□□□□ -1.55
USP54-216ENST00000498143 SLX4Q8IY92 1834 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 MYMKA6NI61 221 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 H7C1W4 665 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 SLC27A2O14975 620 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ARHGEF9O43307 516 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 NBNO60934 754 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ARF4P18085 180 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 KRT24Q2M2I5 525 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 KRT71Q3SY84 523 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 VWA2Q5GFL6 755 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 RD3Q7Z3Z2 195 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 SRGAP1Q7Z6B7 1085 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 DSG4Q86SJ6 1040 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 CEP76Q8TAP6 659 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 UTP15Q8TED0 518 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 MAIP1Q8WWC4 291 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 KIAA1143Q96AT1 154 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 MTMR8Q96EF0 704 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ASIC4Q96FT7 647 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 DUSP9Q99956 384 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 BRD8Q9H0E9 1235 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 BICC1Q9H694 974 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 ACTR5Q9H9F9 607 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 DNAJC17Q9NVM6 304 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 KCNK4Q9NYG8 393 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 STMN3Q9NZ72 180 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 FLRT1Q9NZU1 646 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 FAM198AQ9UFP1 575 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 NOVA2Q9UNW9 492 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 CRYBG1Q9Y4K1 1723 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 TRPV2Q9Y5S1 764 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 C9IYK1 514 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 RASA4BC9J798 803 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 VWA5AO00534 786 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ITGAVP06756 1048 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 POLR2MP0CAP2 368 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 DDX5P17844 614 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 CCNE1P24864 410 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ELAVL2Q12926 359 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 BOLA3Q53S33 107 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 PRR16Q569H4 304 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 NUGGCQ68CJ6 796 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 CCDC62Q6P9F0 684 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 TRIM50Q86XT4 487 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 EPS8L1Q8TE68 723 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 IPCEF1Q8WWN9 437 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 NDRG1Q92597 394 aaKnown RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 HPS1Q92902 700 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 C8orf33Q9H7E9 229 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 EPB41L4AQ9HCS5 686 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 C11orf16Q9NQ32 467 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 HCFC2Q9Y5Z7 792 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 ABCA2Q9BZC7 2435 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 AP5Z1O43299 807 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 RTN3O95197 1032 aaPredicted RBP5.36□□□□□ -1.55
USP54-216ENST00000498143 TTLL1O95922 423 aa5.36□□□□□ -1.55
USP54-216ENST00000498143 HDAC4P56524 1084 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms