RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	SHOC2	Q9UQ13	582 aa		4.4	□□□□□ -1.71
CBX3-208	ENST00000497498	COL4A3BP	Q9Y5P4	624 aa		4.4	□□□□□ -1.71
CBX3-208	ENST00000497498	TH	P07101	528 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	CYP2C9	P11712	490 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	LRPAP1	P30533	357 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	KCNJ5	P48544	419 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	BRDT	Q58F21	947 aa	Predicted RBP	4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	ATAT1	Q5SQI0	421 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	KIRREL2	Q6UWL6	708 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	ABHD11	Q8NFV4	315 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	PLBD2	Q8NHP8	589 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	MTFMT	Q96DP5	389 aa	Known RBP	4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	DAZAP1	Q96EP5	407 aa	Known RBP	4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	MRGPRX1	Q96LB2	322 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	C5orf34	Q96MH7	638 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	MESP1	Q9BRJ9	268 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	TMEM79	Q9BSE2	394 aa		4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	TUBA8	Q9NY65	449 aa	Predicted RBP	4.39	□□□□□ -1.71
CBX3-208	ENST00000497498	KCNU1	A8MYU2	1149 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	POC1B-GALNT4	F8VUJ3	575 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	hCG_1984214	I3L0E3	225 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	DLD	P09622	509 aa	Known RBP	4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	SLC11A2	P49281	568 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	PDE6C	P51160	858 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	UCP3	P55916	312 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	TPTE	P56180	551 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	WNT3	P56703	355 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	GPSM2	P81274	684 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	MYO1E	Q12965	1108 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	LAMB3	Q13751	1172 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	FCRL6	Q6DN72	434 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	ZBTB46	Q86UZ6	589 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	GALNT4	Q8N4A0	578 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	TERB1	Q8NA31	727 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	XAGE5	Q8WWM1	108 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	C1GALT1C1	Q96EU7	318 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	LENG8	Q96PV6	779 aa	Predicted RBP	4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	SNX18	Q96RF0	628 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	MAP3K14	Q99558	947 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	CGRRF1	Q99675	332 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	SPRTN	Q9H040	489 aa	Predicted RBP	4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	VPS16	Q9H269	839 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	CXorf36	Q9H7Y0	433 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	ANLN	Q9NQW6	1124 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	HOMER2	Q9NSB8	354 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	ELOVL5	Q9NYP7	299 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	STXBP5L	Q9Y2K9	1186 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	MRPS17	Q9Y2R5	130 aa	Known RBP	4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	TMX2	Q9Y320	296 aa		4.38	□□□□□ -1.71
CBX3-208	ENST00000497498	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
CBX3-208	ENST00000497498		A0A088AWK7	358 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	IKBKB	O14920	756 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	BCAR3	O75815	825 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	PRKCB	P05771	671 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	CHRM5	P08912	532 aa	Predicted RBP	4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	NR4A2	P43354	598 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	MMP13	P45452	471 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	TRIP6	Q15654	476 aa	Known RBP	4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	ZIK1	Q3SY52	487 aa	Predicted RBP	4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	KRT73	Q86Y46	540 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	ZNF280B	Q86YH2	543 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	ZC3H10	Q96K80	434 aa	Known RBP	4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	CAMKK2	Q96RR4	588 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	SLC12A5	Q9H2X9	1139 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	PDGFC	Q9NRA1	345 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	ANKRD6	Q9Y2G4	727 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498	WDR17	Q8IZU2	1322 aa		4.37	□□□□□ -1.71
CBX3-208	ENST00000497498		A0A087WWL8	130 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	TCRBV5S1A1T	A0A578	114 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	IGSF3	O75054	1194 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	PDE8B	O95263	885 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	XRCC6	P12956	609 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	ARHGAP25	P42331	645 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	NEK2	P51955	445 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	DGKE	P52429	567 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	ARFIP2	P53365	341 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	SATB1	Q01826	763 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	CYP1B1	Q16678	543 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	DEPDC1	Q5TB30	811 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	AWAT2	Q6E213	333 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	TECPR1	Q7Z6L1	1165 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	GAS2L3	Q86XJ1	694 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	SLC15A3	Q8IY34	581 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	GRAMD1C	Q8IYS0	662 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	ABRA	Q8N0Z2	381 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	OSCP1	Q8WVF1	389 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	RSPRY1	Q96DX4	576 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	ARMT1	Q9H993	441 aa		4.36	□□□□□ -1.71
CBX3-208	ENST00000497498	CCNL1	Q9UK58	526 aa	Predicted RBP	4.36	□□□□□ -1.71
CBX3-208	ENST00000497498		E5RJQ4	531 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	TRIM38	O00635	465 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	EXOC3	O60645	756 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	USP1	O94782	785 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	ABLIM3	O94929	683 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	NTN1	O95631	604 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	PF4V1	P10720	104 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	CYP2A6	P11509	494 aa	Predicted RBP	4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	KCNA3	P22001	575 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	ADORA2A	P29274	412 aa		4.35	□□□□□ -1.71
CBX3-208	ENST00000497498	CCT4	P50991	539 aa	Known RBP	4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms