RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 PGM5Q15124 567 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 SMAD2Q15796 467 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 TRIM60Q495X7 471 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 SLC39A5Q6ZMH5 540 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 ARHGEF18Q6ZSZ5 1173 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 Q6ZUG5 572 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 DPH6Q7L8W6 267 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 RNF180Q86T96 592 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 KLHL36Q8N4N3 616 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 FERMT2Q96AC1 680 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 IL17RAQ96F46 866 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 RMDN3Q96TC7 470 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 MYCBPQ99417 103 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 PDCD2LQ9BRP1 358 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 UPF3BQ9BZI7 483 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 BARX1Q9HBU1 254 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 PXMP2Q9NR77 195 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 MAP3K20Q9NYL2 800 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 CWC15Q9P013 229 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 CNOT11Q9UKZ1 510 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 ZMYND8Q9ULU4 1186 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 CBLCQ9ULV8 474 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 NUB1Q9Y5A7 615 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 LAMA3Q16787 3333 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 GOLGA8AA7E2F4 631 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF839A8K0R7 811 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 GOLGA8BA8MQT2 603 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 SMTNL1A8MU46 457 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 MAN2B1O00754 1011 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 ZBTB43O43298 467 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 CRTAMO95727 393 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 KNG1P01042 644 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 AMY2AP04746 511 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 AMY2BP19961 511 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 GNAQP50148 359 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 JAM2P57087 298 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 PPP2CBP62714 309 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 PPP2CAP67775 309 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 ICAM4Q14773 271 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 DUSP28Q4G0W2 176 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 TEX35Q5T0J7 233 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 IQSEC1Q6DN90 963 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 PKN3Q6P5Z2 889 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 CCDC62Q6P9F0 684 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 USP17L6PQ6QN14 398 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 RUFY3Q7L099 469 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 MAMDC2Q7Z304 686 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-208ENST00000497026 SAMD3Q8N6K7 520 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 NSUN6Q8TEA1 469 aaKnown RBP5.5□□□□□ -1.53
CSMD3-208ENST00000497026 FBXW5Q969U6 566 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 RRP36Q96EU6 259 aaKnown RBP5.5□□□□□ -1.53
CSMD3-208ENST00000497026 SAMD11Q96NU1 681 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 DEPDC7Q96QD5 511 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 IWS1Q96ST2 819 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 GDF15Q99988 308 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 LZTS2Q9BRK4 669 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 KRTAP3-1Q9BYR8 98 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 WDR11Q9BZH6 1224 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 TM6SF1Q9BZW5 370 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 STARD7Q9NQZ5 370 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 RBM28Q9NW13 759 aaKnown RBP5.5□□□□□ -1.53
CSMD3-208ENST00000497026 SRPK3Q9UPE1 567 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 MRPS23Q9Y3D9 190 aaKnown RBP5.5□□□□□ -1.53
CSMD3-208ENST00000497026 Q9Y3F1 56 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 NR2E3Q9Y5X4 410 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 GRIN2DO15399 1336 aa5.5□□□□□ -1.53
CSMD3-208ENST00000497026 TANC1Q9C0D5 1861 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 GCOM1H8Y6P7 765 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ADAMTS3O15072 1205 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 GPR42O15529 346 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SUV39H1O43463 412 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 POLR2MP0CAP2 368 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TXNP10599 105 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF20P17024 532 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 PTPN1P18031 435 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ITGB8P26012 769 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 PSMA5P28066 241 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 PDIA3P30101 505 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 METAP2P50579 478 aaKnown RBP eCLIP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 CDK7P50613 346 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 GTF2A1P52655 376 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 MRPS9P82933 396 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TLE2Q04725 743 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ARHGAP1Q07960 439 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TRAF1Q13077 416 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SERINC3Q13530 473 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 PPP2R5BQ15173 497 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 RABEP1Q15276 862 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TERF2Q15554 542 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 GPR19Q15760 415 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 STXBP2Q15833 593 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 FSCN1Q16658 493 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 UBE2SQ16763 222 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 LY6KQ17RY6 165 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ARHGEF16Q5VV41 709 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 CXCL17Q6UXB2 119 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SYNE3Q6ZMZ3 975 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 NOL8Q76FK4 1167 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 HEATR3Q7Z4Q2 680 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TXLNBQ8N3L3 684 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms