RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 F5P12259 2224 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 COL4A3Q01955 1670 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 A0A1W2PQ27 194 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 A0A1W2PQ64 194 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 A0A1W2PQD8 194 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 A8MXQ7 604 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TRIM66O15016 1216 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CALUO43852 315 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-214ENST00000496043 C4BPAP04003 597 aaKnown RBP13.6□□□□□ -0.23
PTPRF-214ENST00000496043 USP17L7P0C7H9 530 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CTHP32929 405 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CXCL12P48061 93 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CASP4P49662 377 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CCR3P51677 355 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CLDN10P78369 228 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 AMPD2Q01433 879 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TNK2Q07912 1038 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 RUNX3Q13761 415 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 MDH1BQ5I0G3 518 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TSSK4Q6SA08 328 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 SPEM1Q8N4L4 309 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 ZBTB44Q8NCP5 570 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 PLEKHO2Q8TD55 490 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 NELL1Q92832 810 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 PCED1BQ96HM7 432 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CYP2S1Q96SQ9 504 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 FAM83CQ9BQN1 747 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 XYLT2Q9H1B5 865 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 VRTNQ9H8Y1 702 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TRPC7Q9HCX4 862 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 PRMT8Q9NR22 394 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-214ENST00000496043 CCL26Q9Y258 94 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 FRMD4BQ9Y2L6 1034 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TSC2P49815 1807 aa13.6□□□□□ -0.23
PTPRF-214ENST00000496043 TRAV19A0A0A6YYK7 116 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 LRRIQ3A6PVS8 624 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-214ENST00000496043 RHOBTB3O94955 611 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 NR3C1P04150 777 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 HDCP19113 662 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 PPP3CCP48454 512 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 FAM160A1Q05DH4 1040 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 NCOA4Q13772 614 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 PON2Q15165 354 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 SGSM1Q2NKQ1 1148 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 ZNF667Q5HYK9 610 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 TDRD10Q5VZ19 366 aaKnown RBP13.59□□□□□ -0.23
PTPRF-214ENST00000496043 TXNDC11Q6PKC3 985 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 KRBA2Q6ZNG9 492 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 DENND5BQ6ZUT9 1274 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 SYNPOQ8N3V7 929 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 SUMF1Q8NBK3 374 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 TMC2Q8TDI7 906 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 RUBCNQ92622 972 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 CCDC34Q96HJ3 373 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 C8orf48Q96LL4 319 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 TRPM5Q9NZQ8 1165 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 TRAF3IP3Q9Y228 551 aa13.59□□□□□ -0.23
PTPRF-214ENST00000496043 RIF1Q5UIP0 2472 aaKnown RBP13.59□□□□□ -0.23
PTPRF-214ENST00000496043 MIA3Q5JRA6 1907 aa13.58□□□□□ -0.23
PTPRF-214ENST00000496043 IKBKBO14920 756 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 LILRB5O75023 590 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 TADA3O75528 432 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 CLSTN1O94985 981 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 ZNF202O95125 648 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 P4HA1P13674 534 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 PFKLP17858 780 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 PDE6CP51160 858 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 CDH8P55286 799 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 DPYDQ12882 1025 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 BECN1Q14457 450 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 PDGFRLQ15198 375 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 ZNF699Q32M78 642 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 CEP135Q66GS9 1140 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 ARL14EPQ8N8R7 260 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-214ENST00000496043 EXOC4Q96A65 974 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 HINFPQ9BQA5 517 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 EBF3Q9H4W6 596 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 RBM12Q9NTZ6 932 aaKnown RBP13.58□□□□□ -0.24
PTPRF-214ENST00000496043 GCNT4Q9P109 453 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 NME7Q9Y5B8 376 aa13.58□□□□□ -0.24
PTPRF-214ENST00000496043 F8VP50 259 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 MAPK13O15264 365 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 VNN1O95497 513 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 CKMP06732 381 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 PRR29P0C7W0 189 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 RPL13P26373 211 aaKnown RBP13.57□□□□□ -0.24
PTPRF-214ENST00000496043 NOP14P78316 857 aaKnown RBP13.57□□□□□ -0.24
PTPRF-214ENST00000496043 DLG4P78352 724 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 GRSF1Q12849 480 aaKnown RBP eCLIP13.57□□□□□ -0.24
PTPRF-214ENST00000496043 NR1H3Q13133 447 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 GAS6Q14393 721 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 KCNB1Q14721 858 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 TRIM68Q6AZZ1 485 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 SV2AQ7L0J3 742 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 B3GALNT2Q8NCR0 500 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 TTC16Q8NEE8 873 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 TAF4BQ92750 862 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 TNIP3Q96KP6 325 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 SLC22A12Q96S37 553 aa13.57□□□□□ -0.24
PTPRF-214ENST00000496043 TTLL2Q9BWV7 592 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms