RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TMEM240Q5SV17 173 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 UBXN11Q5T124 520 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ANKRD45Q5TZF3 282 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 SNRNP48Q6IEG0 339 aaKnown RBP7.52□□□□□ -1.21
VIM-207ENST00000495528 MFSD5Q6N075 450 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 MAMDC4Q6UXC1 1216 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ARHGEF18Q6ZSZ5 1173 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 AMOTL1Q8IY63 956 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 MSL3Q8N5Y2 521 aaKnown RBP7.52□□□□□ -1.21
VIM-207ENST00000495528 CDYL2Q8N8U2 506 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 OR14K1Q8NGZ2 314 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 NUP133Q8WUM0 1156 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 LMBR1Q8WVP7 490 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 GAB3Q8WWW8 586 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 PPM1EQ8WY54 764 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 TIFAQ96CG3 184 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 WDR92Q96MX6 357 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ACAP3Q96P50 834 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 SLF1Q9BQI6 1058 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 QRSL1Q9H0R6 528 aaKnown RBP7.52□□□□□ -1.21
VIM-207ENST00000495528 KCTD10Q9H3F6 313 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 HOMER2Q9NSB8 354 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 TBX21Q9UL17 535 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 TMPRSS11EQ9UL52 423 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 A0A0G2JMZ2 1700 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 ZNF536O15090 1300 aa7.52□□□□□ -1.21
VIM-207ENST00000495528 SPTBN5Q9NRC6 3674 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 CDH23Q9H251 3354 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ALG1L2C9J202 215 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 PRICKLE3O43900 615 aaPredicted RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 H2AFYO75367 372 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 ASGR1P07306 291 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 CSF2RAP15509 400 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ENPP1P22413 925 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 CST5P28325 142 aaPredicted RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 LGALS4P56470 323 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ERVK-21P61565 698 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ACVR2BQ13705 512 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ACAP1Q15027 740 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 FSCN1Q16658 493 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 RNF151Q2KHN1 245 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 AGBL4Q5VU57 503 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 KLHDC10Q6PID8 442 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 FRMD5Q7Z6J6 570 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 RPUSD2Q8IZ73 545 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 CPXCR1Q8N123 301 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 GLT1D1Q96MS3 346 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 SMAD5Q99717 465 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 TEX13BQ9BXU2 312 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.51□□□□□ -1.21
VIM-207ENST00000495528 RAVER2Q9HCJ3 691 aaKnown RBP7.51□□□□□ -1.21
VIM-207ENST00000495528 CLIP2Q9UDT6 1046 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 PRSS50Q9UI38 385 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 TRHDEQ9UKU6 1024 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 NR2E1Q9Y466 385 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 NUMBLQ9Y6R0 609 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 EYSQ5T1H1 3165 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 ELP1O95163 1332 aa7.51□□□□□ -1.21
VIM-207ENST00000495528 PRUNE2Q8WUY3 3088 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 NAV1Q8NEY1 1877 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 A0A0A6YYK5 440 aaPredicted RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 ATP2A1O14983 1001 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 CTAGE5O15320 804 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 ZBED4O75132 1171 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 NDUFB10O96000 172 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 MT-CO1P00395 513 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 PPP2CBP62714 309 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 PPP2CAP67775 309 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 CCT2P78371 535 aaKnown RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 PPIGQ13427 754 aaKnown RBP eCLIP7.5□□□□□ -1.21
VIM-207ENST00000495528 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.5□□□□□ -1.21
VIM-207ENST00000495528 SBK1Q52WX2 424 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 TOR2AQ5JU69 321 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 CCDC129Q6ZRS4 1044 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 USP30Q70CQ3 517 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 ZNF365Q70YC5 407 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 GAREM2Q75VX8 874 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 CENPQQ7L2Z9 268 aaPredicted RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 LYSMD2Q8IV50 215 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 ANKRD35Q8N283 1001 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 PCSK9Q8NBP7 692 aaKnown RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 STRBPQ96SI9 672 aaKnown RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 SOX7Q9BT81 388 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 UPF3AQ9H1J1 476 aaKnown RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 OR10A2Q9H208 303 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 ABHD16BQ9H3Z7 469 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.5□□□□□ -1.21
VIM-207ENST00000495528 NYAP2Q9P242 653 aa7.5□□□□□ -1.21
VIM-207ENST00000495528 RBM8AQ9Y5S9 174 aaKnown RBP7.5□□□□□ -1.21
VIM-207ENST00000495528 ZNFX1Q9P2E3 1918 aaKnown RBP7.49□□□□□ -1.21
VIM-207ENST00000495528 TTC28Q96AY4 2481 aa7.49□□□□□ -1.21
VIM-207ENST00000495528 IGKV6D-41A0A0C4DH26 115 aa7.49□□□□□ -1.21
VIM-207ENST00000495528 A0A0U1RQG5 324 aaPredicted RBP7.49□□□□□ -1.21
VIM-207ENST00000495528 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.49□□□□□ -1.21
VIM-207ENST00000495528 CNOT4O95628 575 aaKnown RBP7.49□□□□□ -1.21
VIM-207ENST00000495528 CD4P01730 458 aa7.49□□□□□ -1.21
VIM-207ENST00000495528 XPAP23025 273 aaPredicted RBP7.49□□□□□ -1.21
VIM-207ENST00000495528 CYP2C18P33260 490 aa7.49□□□□□ -1.21
VIM-207ENST00000495528 GPR3P46089 330 aa7.49□□□□□ -1.21
VIM-207ENST00000495528 CDK17Q00537 523 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms