RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SOX13Q9UN79 622 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 GOLGA8RI6L899 631 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 CASQ2O14958 399 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-230ENST00000495090 SETSIPP0DME0 302 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 ARP10275 920 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 ATF7P17544 494 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-230ENST00000495090 CPOXP36551 454 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 CDKN2BP42772 138 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 CLDN10P78369 228 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 MSS51Q4VC12 460 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 CFAP157Q5JU67 520 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 EFHC1Q5JVL4 640 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 FNBP1LQ5T0N5 605 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 KAZNQ674X7 775 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 SLC30A10Q6XR72 485 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 RAPH1Q70E73 1250 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 NIPA1Q7RTP0 329 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 MIER3Q7Z3K6 550 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 TRIM74Q86UV6 250 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 TRIM73Q86UV7 250 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 RHPN2Q8IUC4 686 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PDIK1LQ8N165 341 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 TTC17Q96AE7 1141 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 SERAC1Q96JX3 654 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 TTC1Q99614 292 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 THTPAQ9BU02 230 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 KLHL4Q9C0H6 718 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PNPLA8Q9NP80 782 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.12□□□□□ -0.79
SYNE1-230ENST00000495090 GALNT8Q9NY28 637 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PLK2Q9NYY3 685 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 SIRPGQ9P1W8 387 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PI4KBQ9UBF8 816 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PPARGC1AQ9UBK2 798 aaKnown RBP10.12□□□□□ -0.79
SYNE1-230ENST00000495090 ZNF180Q9UJW8 692 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 PRR12Q9ULL5 1215 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 ZNRF3Q9ULT6 936 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 TBX20Q9UMR3 447 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 SH3BP1Q9Y3L3 701 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 IKBKGQ9Y6K9 419 aa10.12□□□□□ -0.79
SYNE1-230ENST00000495090 A0A088AWK7 358 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM191CA6NGB0 347 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 GNPATO15228 680 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 SLC16A4O15374 487 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ZSCAN9O15535 394 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 STRNO43815 780 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 BAG2O95816 211 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 INHBAP08476 426 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ITGA2BP08514 1039 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM191BP0C7N4 346 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 HARSP12081 509 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CCNFP41002 786 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CPA2P48052 419 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CHN2P52757 468 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ZNF200P98182 395 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TAP1Q03518 808 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 BTKQ06187 659 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 WASHC5Q12768 1159 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 HIC1Q14526 733 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 HSF5Q4G112 596 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ANKRD20A4Q4UJ75 823 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TEX44Q53QW1 395 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ARMC3Q5W041 872 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PLA2G4FQ68DD2 849 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 APOBEC3HQ6NTF7 200 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 LLGL2Q6P1M3 1020 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 POLNQ7Z5Q5 900 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 NIPA2Q8N8Q9 360 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM161BQ8NDZ6 487 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 RBM17Q96I25 401 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 MAML3Q96JK9 1138 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 MXRA8Q9BRK3 442 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM121Q9BTD3 319 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ALG13Q9NP73 1137 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TOPORSQ9NS56 1045 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 DNAAF2Q9NVR5 837 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CNTN6Q9UQ52 1028 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 USTQ9Y2C2 406 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 C2orf71A6NGG8 1288 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 E5RJQ4 531 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PI4K2BG5E9Z4 385 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 COPEO14579 308 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 OPHN1O60890 802 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 BANF1O75531 89 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 CFBP00751 764 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 VCLP18206 1134 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ACO1P21399 889 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 GARTP22102 1010 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 GJC1P36383 396 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 GRIA2P42262 883 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 QARSP47897 775 aaKnown RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PEX3P56589 373 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 MSLNQ13421 630 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 PIGHQ14442 188 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 WDR44Q5JSH3 913 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 TTC39BQ5VTQ0 682 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-230ENST00000495090 ANKRD22Q5VYY1 191 aa10.11□□□□□ -0.79
SYNE1-230ENST00000495090 SMYD5Q6GMV2 418 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms