RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KNL1Q8NG31 2342 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TCRBV7S2A1N4TA0A589 114 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RASA4BC9J798 803 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CXCL11O14625 94 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RASA4O43374 803 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SUPT3HO75486 399 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SLC4A1P02730 911 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PDGFRAP16234 1089 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RABGGTBP53611 331 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 BCAR1P56945 870 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 YWHAEP62258 255 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CYLC2Q14093 348 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TAF12Q16514 161 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DGKDQ16760 1214 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LONRF1Q17RB8 773 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 EPM2AIP1Q7L775 607 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HIPK4Q8NE63 616 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NIF3L1Q9GZT8 377 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NACA2Q9H009 215 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DHX35Q9H5Z1 703 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ALG13Q9NP73 1137 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PAPPAQ13219 1627 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LACTBL1A8MY62 500 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 F8VP50 259 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TPD52L2O43399 206 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SPAG7O75391 227 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HAUS5O94927 633 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MOCS2O96007 188 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CALB2P22676 271 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GSTT1P30711 240 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GTF2A2P52657 109 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SPARCL1Q14515 664 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PSMD6Q15008 389 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KYNUQ16719 465 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LRRC36Q1X8D7 754 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CELF3Q5SZQ8 465 aaKnown RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 JADE1Q6IE81 842 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 XRRA1Q6P2D8 792 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RASSF3Q86WH2 238 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 JAMLQ86YT9 394 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KLF6Q99612 283 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SMYD3Q9H7B4 428 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DCLRE1BQ9H816 532 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 DRD4P21917 467 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LAMC2Q13753 1193 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GRIK4Q16099 956 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SGSM1Q2NKQ1 1148 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SYN2Q92777 582 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GALNT8Q9NY28 637 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LRCH1Q9Y2L9 728 aa11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 PRG3Q9Y2Y8 225 aaPredicted RBP11.24□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SYNGAP1Q96PV0 1343 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ECM29Q5VYK3 1845 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 E2F8A0AVK6 867 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 A6NJR5 290 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SMNDC1O75940 238 aaKnown RBP eCLIP11.23□□□□□ -0.611e-8■■□□□ 12
MSH5-SAPCD1-207ENST00000493662 RIPK1Q13546 671 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KPNB1Q14974 876 aaKnown RBP11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NT5DC3Q86UY8 548 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CD302Q8IX05 232 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CCT6BQ92526 530 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CEP41Q9BYV8 373 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MROH8Q9H579 483 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 COG5Q9UP83 839 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LIN7AO14910 233 aaPredicted RBP11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ATP6V1G1O75348 118 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 TBXAS1P24557 533 aaPredicted RBP11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ACAD10Q6JQN1 1059 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MPZL3Q6UWV2 235 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NMD3Q96D46 503 aaKnown RBP11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LPIN3Q9BQK8 851 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MINDY3Q9H8M7 445 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GINM1Q9NU53 330 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CASTOR2A6NHX0 329 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 HUS1O60921 280 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZSCAN5DPP0CG00 497 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 MED21Q13503 144 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ACVR2BQ13705 512 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CCL14Q16627 93 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RNF220Q5VTB9 566 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 IRGCQ6NXR0 463 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ADAM32Q8TC27 787 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 STK32AQ8WU08 396 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NDNQ99608 321 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 OSBPL8Q9BZF1 889 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 RNPEPL1Q9HAU8 725 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SIX2Q9NPC8 291 aa11.23□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ZMYM2Q9UBW7 1377 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GLTPD2A6NH11 291 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SPDYE5A6NIY4 337 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GRIN3BO60391 1043 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 KRT16P08779 473 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 SCNN1BP51168 640 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 ARSEP51690 589 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 CDK17Q00537 523 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 FMO1Q01740 532 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 LACTB2Q53H82 288 aaPredicted RBP11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 C1orf146Q5VVC0 180 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 NIPA1Q7RTP0 329 aa11.22□□□□□ -0.61
MSH5-SAPCD1-207ENST00000493662 GPR142Q7Z601 462 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms