RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 SOBPA7XYQ1 873 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 ZSCAN22P10073 491 aaPredicted RBP16.81■□□□□ 0.28
SMPD4-220ENST00000491319 TNNI1P19237 187 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 TGM1P22735 817 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 WARSP23381 471 aaKnown RBP16.81■□□□□ 0.28
SMPD4-220ENST00000491319 MAGEA11P43364 429 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 FAM160A1Q05DH4 1040 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 CYP24A1Q07973 514 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 USP4Q13107 963 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 PKP1Q13835 747 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 ZNF268Q14587 947 aaPredicted RBP16.81■□□□□ 0.28
SMPD4-220ENST00000491319 MTF1Q14872 753 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 ZNF77Q15935 545 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 LAIR1Q6GTX8 287 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 FSTL4Q6MZW2 842 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 CC2D1AQ6P1N0 951 aaPredicted RBP16.81■□□□□ 0.28
SMPD4-220ENST00000491319 C4orf50Q6ZRC1 276 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 TRAPPC11Q7Z392 1133 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 HSCBQ8IWL3 235 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 TTC16Q8NEE8 873 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 CCDC127Q96BQ5 260 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 CYP2S1Q96SQ9 504 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 MMS19Q96T76 1030 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 CGRRF1Q99675 332 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 MRPL45Q9BRJ2 306 aaKnown RBP16.81■□□□□ 0.28
SMPD4-220ENST00000491319 MAGEF1Q9HAY2 307 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 PCDHA7Q9UN72 937 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 SPTBN2O15020 2390 aa16.81■□□□□ 0.28
SMPD4-220ENST00000491319 TRAV19A0A0A6YYK7 116 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 C2orf78A6NCI8 922 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 HRO43593 1189 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 CST3P01034 146 aaPredicted RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 CKMP06732 381 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 PDGFRBP09619 1106 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 BDNFP23560 247 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 AFMP43652 599 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 ME1P48163 572 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 CYP27A1Q02318 531 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 SPEM2Q0P670 501 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 CUL4BQ13620 913 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 SIM2Q14190 667 aaPredicted RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 PSMD6Q15008 389 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 TMEM196Q5HYL7 178 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 NAIF1Q69YI7 327 aaPredicted RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 LONP2Q86WA8 852 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 GRAMD1CQ8IYS0 662 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 SYNPOQ8N3V7 929 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 GPR161Q8N6U8 529 aaKnown RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 XXYLT1Q8NBI6 393 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 FNBP1Q96RU3 617 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 GZF1Q9H116 711 aaPredicted RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 SLC39A2Q9NP94 309 aa16.8■□□□□ 0.28
SMPD4-220ENST00000491319 MAGEC2Q9UBF1 373 aaPredicted RBP16.8■□□□□ 0.28
SMPD4-220ENST00000491319 TRDMT1O14717 391 aaKnown RBP16.79■□□□□ 0.28
SMPD4-220ENST00000491319 HSP90AA1P07900 732 aaKnown RBP16.79■□□□□ 0.28
SMPD4-220ENST00000491319 USP17L7P0C7H9 530 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 USP46P62068 366 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 GRSF1Q12849 480 aaKnown RBP eCLIP16.79■□□□□ 0.28
SMPD4-220ENST00000491319 BMT2Q1RMZ1 405 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 MDH1BQ5I0G3 518 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 RESP18Q5W5W9 173 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 HS2ST1Q7LGA3 356 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 ARL14EPQ8N8R7 260 aaPredicted RBP16.79■□□□□ 0.28
SMPD4-220ENST00000491319 PCED1BQ96HM7 432 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 FAM13BQ9NYF5 915 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 GCNT4Q9P109 453 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 WNT6Q9Y6F9 365 aa16.79■□□□□ 0.28
SMPD4-220ENST00000491319 EGFP01133 1207 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 GRIK1P39086 918 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 CASP4P49662 377 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 SNRPFP62306 86 aaKnown RBP16.78■□□□□ 0.28
SMPD4-220ENST00000491319 LMNB2Q03252 620 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 KCNB1Q14721 858 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 PDGFRLQ15198 375 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 MAPRE1Q15691 268 aaKnown RBP16.78■□□□□ 0.28
SMPD4-220ENST00000491319 VSTM1Q6UX27 236 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.78■□□□□ 0.28
SMPD4-220ENST00000491319 FSIP1Q8NA03 581 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 MYCBPAPQ8TBZ2 947 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 OSCP1Q8WVF1 389 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 ZNF516Q92618 1163 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 SPATA17Q96L03 361 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 DPEP3Q9H4B8 488 aa16.78■□□□□ 0.28
SMPD4-220ENST00000491319 FBRSL1Q9HCM7 1045 aaKnown RBP16.78■□□□□ 0.28
SMPD4-220ENST00000491319 DUS2Q9NX74 493 aaKnown RBP16.78■□□□□ 0.28
SMPD4-220ENST00000491319 NCOR2Q9Y618 2525 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 NUP205Q92621 2012 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 PVALEFA0A1B0GWK0 134 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 RNF40O75150 1001 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 TACC1O75410 805 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 ANXA13P27216 316 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 CNR2P34972 360 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 GJA4P35212 333 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 IFNAR2P48551 515 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 PXNP49023 591 aaPredicted RBP16.77■□□□□ 0.28
SMPD4-220ENST00000491319 TNNC1P63316 161 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 DNM1Q05193 864 aaKnown RBP16.77■□□□□ 0.28
SMPD4-220ENST00000491319 KNOP1Q1ED39 458 aaKnown RBP16.77■□□□□ 0.28
SMPD4-220ENST00000491319 EML3Q32P44 896 aa16.77■□□□□ 0.28
SMPD4-220ENST00000491319 WDR72Q3MJ13 1102 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms