RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZDHHC24Q6UX98 284 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 ZNF761Q86XN6 746 aaPredicted RBP4.71□□□□□ -1.66
PTCD3-216ENST00000487043 ANKRD18AQ8IVF6 992 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 YAF2Q8IY57 180 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 FITM2Q8N6M3 262 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 TEX19Q8NA77 164 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 GLIS1Q8NBF1 620 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 RNF169Q8NCN4 708 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 TFAP2CQ92754 450 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 DDX17Q92841 729 aaKnown RBP4.71□□□□□ -1.66
PTCD3-216ENST00000487043 SCAMP4Q969E2 229 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 SPSB4Q96A44 273 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 PHACTR3Q96KR7 559 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 TMEM120AQ9BXJ8 343 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.71□□□□□ -1.661e-6■■■□□ 14.7
PTCD3-216ENST00000487043 AGO3Q9H9G7 860 aaKnown RBP4.71□□□□□ -1.66
PTCD3-216ENST00000487043 AS3MTQ9HBK9 375 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 SPON1Q9HCB6 807 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 MRPS18AQ9NVS2 196 aaKnown RBP4.71□□□□□ -1.66
PTCD3-216ENST00000487043 CNOT11Q9UKZ1 510 aaKnown RBP4.71□□□□□ -1.66
PTCD3-216ENST00000487043 PIK3C2BO00750 1634 aa4.71□□□□□ -1.66
PTCD3-216ENST00000487043 MROH2AA6NES4 1674 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 SPATA31D1Q6ZQQ2 1576 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 RAB27BO00194 218 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 MATN2O00339 956 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 ACKR2O00590 384 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 PIP5K1BO14986 540 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 VPS4BO75351 444 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 ANXA1P04083 346 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 PIM1P11309 404 aaPredicted RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 VEGFAP15692 232 aaPredicted RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 CNR2P34972 360 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 SERPINF1P36955 418 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 PTTG1IPP53801 180 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 RAC3P60763 192 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 TIGD6Q17RP2 521 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 FKBP15Q5T1M5 1219 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 USP49Q70CQ1 688 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 SUGP1Q8IWZ8 645 aaKnown RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 VGLL2Q8N8G2 317 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 CYP2W1Q8TAV3 490 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 STYXQ8WUJ0 223 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 ZNF512Q96ME7 567 aaPredicted RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 KLHL32Q96NJ5 620 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 GDF15Q99988 308 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 DPYSL5Q9BPU6 564 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 EIF2AK1Q9BQI3 630 aaKnown RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 CPPED1Q9BRF8 314 aaPredicted RBP4.7□□□□□ -1.66
PTCD3-216ENST00000487043 RGL1Q9NZL6 768 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 IGSF9Q9P2J2 1179 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 PRAG1Q86YV5 1406 aa4.7□□□□□ -1.66
PTCD3-216ENST00000487043 ADGRB3O60242 1522 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 PRR5-ARHGAP8B1AHC4 643 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 E9PLN8 166 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 SYT5O00445 386 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 CDC14BO60729 498 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 TNFRSF6BO95407 300 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 ITGB1P05556 798 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 PYGLP06737 847 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 BTF3P20290 206 aaKnown RBP4.69□□□□□ -1.66
PTCD3-216ENST00000487043 GABRB3P28472 473 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 PTK2BQ14289 1009 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 SLC29A2Q14542 456 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 ARHGAP15Q53QZ3 475 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 WDR78Q5VTH9 848 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 JAKMIP3Q5VZ66 844 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 FAM160B1Q5W0V3 765 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 EFCAB12Q6NXP0 572 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 JMJD6Q6NYC1 403 aaPredicted RBP4.69□□□□□ -1.66
PTCD3-216ENST00000487043 FAM111BQ6SJ93 734 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 MED25Q71SY5 747 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 FAM83AQ86UY5 434 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 GPR135Q8IZ08 494 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 PDPRQ8NCN5 879 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 ZFP28Q8NHY6 868 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 TMEM176AQ96HP8 235 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 SNX27Q96L92 541 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 ZSCAN31Q96LW9 406 aaPredicted RBP4.69□□□□□ -1.66
PTCD3-216ENST00000487043 VKORC1Q9BQB6 163 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 FAM167BQ9BTA0 163 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 SPATA5L1Q9BVQ7 753 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 LSM14BQ9BX40 385 aaKnown RBP4.69□□□□□ -1.66
PTCD3-216ENST00000487043 TTYH3Q9C0H2 523 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 SIK2Q9H0K1 926 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 POGKQ9P215 609 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 ADGRF5Q8IZF2 1346 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 MYOM2P54296 1465 aa4.69□□□□□ -1.66
PTCD3-216ENST00000487043 TMEM131LA2VDJ0 1609 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 FER1L4A9Z1Z3 1794 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 GPRASP1Q5JY77 1395 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 TNRQ92752 1358 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 ADAMTSL3P82987 1691 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 A0A087WZ62 844 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 H7C4K7 107 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 PRSS23O95084 383 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 CHEK2O96017 543 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 A1BGP04217 495 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 SRGNP10124 158 aa4.68□□□□□ -1.66
PTCD3-216ENST00000487043 HSPA5P11021 654 aaKnown RBP4.68□□□□□ -1.66
PTCD3-216ENST00000487043 IDEP14735 1019 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms