RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 DEPTORQ8TB45 409 aa6.4□□□□□ -1.38
HERC4-209ENST00000473533 SLC44A1Q8WWI5 657 aa6.4□□□□□ -1.38
HERC4-209ENST00000473533 SREK1Q8WXA9 508 aaKnown RBP6.4□□□□□ -1.38
HERC4-209ENST00000473533 Q9H521 79 aa6.4□□□□□ -1.38
HERC4-209ENST00000473533 FAM124BQ9H5Z6 455 aaPredicted RBP6.4□□□□□ -1.38
HERC4-209ENST00000473533 IFT122Q9HBG6 1241 aa6.4□□□□□ -1.38
HERC4-209ENST00000473533 RBAKQ9NYW8 714 aaPredicted RBP6.4□□□□□ -1.38
HERC4-209ENST00000473533 XPO7Q9UIA9 1087 aaKnown RBP6.4□□□□□ -1.38
HERC4-209ENST00000473533 APOC4-APOC2K7ER74 178 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 PDLIM1O00151 329 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 FCHO1O14526 889 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 APOC2P02655 101 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 NAMPTP43490 491 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 CACNB3P54284 484 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 SESN3P58005 492 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 MAPK6Q16659 721 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 BBS9Q3SYG4 887 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 XKR3Q5GH77 459 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 ARHGEF16Q5VV41 709 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 WDR49Q8IV35 697 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 WDR75Q8IWA0 830 aaKnown RBP6.4□□□□□ -1.39
HERC4-209ENST00000473533 TTC39CQ8N584 583 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 TTC8Q8TAM2 541 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 DCAKDQ8WVC6 231 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 ATP2A3Q93084 1043 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 FHDC1Q9C0D6 1143 aaPredicted RBP6.4□□□□□ -1.39
HERC4-209ENST00000473533 DHX33Q9H6R0 707 aaKnown RBP6.4□□□□□ -1.39
HERC4-209ENST00000473533 ACP6Q9NPH0 428 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 PKD2L1Q9P0L9 805 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 NRXN2Q9P2S2 1712 aa6.4□□□□□ -1.39
HERC4-209ENST00000473533 TM7SF2O76062 418 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 MYCNP04198 464 aaPredicted RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 PSMA2P25787 234 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SERPINB3P29508 390 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 CAP2P40123 477 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SNX16P57768 344 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ROR1Q01973 937 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 WASHC5Q12768 1159 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 TFDP1Q14186 410 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 PGM5Q15124 567 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 KHDC1Q4VXA5 237 aaKnown RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 TMCO4Q5TGY1 634 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ANGEL2Q5VTE6 544 aaKnown RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 STKLD1Q8NE28 680 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SYTL5Q8TDW5 730 aaPredicted RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 ZNF606Q8WXB4 792 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 LZICQ8WZA0 190 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 FAM161BQ96MY7 647 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 PWWP2AQ96N64 755 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 MCEEQ96PE7 176 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 NIF3L1Q9GZT8 377 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 TMEM134Q9H6X4 195 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 TDRD3Q9H7E2 651 aaKnown RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 DBNDD1Q9H9R9 158 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 TOPORSQ9NS56 1045 aaPredicted RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 ASNSD1Q9NWL6 643 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 C2CD2Q9Y426 696 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 COMMD3-BMI1R4GMX3 469 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ADAMTSL1Q8N6G6 1762 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 A0A1W2PPM1 405 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 B2RBV5 119 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 RTN3O95197 1032 aaPredicted RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 MYL2P10916 166 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 DSG3P32926 999 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 RFC5P40937 340 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ZNF132P52740 706 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 GPX6P59796 221 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 YWHAGP61981 247 aaKnown RBP eCLIP6.39□□□□□ -1.39
HERC4-209ENST00000473533 OTUD4Q01804 1114 aaKnown RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 ASPHQ12797 758 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 NAB1Q13506 487 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 NCOA4Q13772 614 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 HIC1Q14526 733 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 LLGL1Q15334 1064 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 HSP90AA5PQ58FG0 334 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 FAM83AQ86UY5 434 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 LRRC6Q86X45 466 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 RFX6Q8HWS3 928 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ANKMY2Q8IV38 441 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 CATSPER1Q8NEC5 780 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 CPT1BQ92523 772 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 PTPRN2Q92932 1015 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 TTC17Q96AE7 1141 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 E2F7Q96AV8 911 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 FERMT1Q9BQL6 677 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 HERPUD2Q9BSE4 406 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 PI4K2AQ9BTU6 479 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 MSTO1Q9BUK6 570 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 KLC2Q9H0B6 622 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 POLR3FQ9H1D9 316 aaPredicted RBP6.39□□□□□ -1.39
HERC4-209ENST00000473533 LHX5Q9H2C1 402 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 GPRC5CQ9NQ84 441 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 ARL8BQ9NVJ2 186 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SLC9A2Q9UBY0 812 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 IVNS1ABPQ9Y6Y0 642 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SMIM31A0A1B0GVY4 71 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SIGLEC16A6NMB1 481 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 PI4K2BG5E9Z4 385 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 K7ERI5 159 aa6.39□□□□□ -1.39
HERC4-209ENST00000473533 SERPINA6P08185 405 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms