RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 DNAJB4Q9UDY4 337 aa4.42□□□□□ -1.7
VPS50-210ENST00000471188 LGALS13Q9UHV8 139 aa4.42□□□□□ -1.7
VPS50-210ENST00000471188 TIMM22Q9Y584 194 aa4.42□□□□□ -1.7
VPS50-210ENST00000471188 CHD4Q14839 1912 aa4.42□□□□□ -1.7
VPS50-210ENST00000471188 A8MU76 341 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ITM2AO43736 263 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 MGEA5O60502 916 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 GMNNO75496 209 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SNRPA1P09661 255 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 THRAP10827 490 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PABPC1P11940 636 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 BGNP21810 368 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 GJC1P36383 396 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PHKA2P46019 1235 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 RCAN1P53805 252 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ATXN3P54252 364 aaPredicted RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 CASP7P55210 303 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ESRRGP62508 458 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 NSUN2Q08J23 767 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS50-210ENST00000471188 COASYQ13057 564 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ITGADQ13349 1161 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 MTM1Q13496 603 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 LRP8Q14114 963 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PSMD6Q15008 389 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SEC23AQ15436 765 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ALX1Q15699 326 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CHRNA2Q15822 529 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 BCL2A1Q16548 175 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ZNF394Q53GI3 561 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 C6orf52Q5T4I8 152 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 RC3H1Q5TC82 1133 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 IZUMO3Q5VZ72 239 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 KRT79Q5XKE5 535 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PPP2R2DQ66LE6 453 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 KRT80Q6KB66 452 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 XKR5Q6UX68 686 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 DCDC5Q6ZRR9 648 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 C3orf62Q6ZUJ4 267 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ARID3BQ8IVW6 561 aaPredicted RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 SDR16C5Q8N3Y7 309 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PDZD8Q8NEN9 1154 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PLBD2Q8NHP8 589 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 DENND1AQ8TEH3 1009 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SKA1Q96BD8 255 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 DCUN1D1Q96GG9 259 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 FAM89AQ96GI7 184 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PLEKHA8Q96JA3 519 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 FERMT1Q9BQL6 677 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ZSWIM1Q9BR11 485 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 HAUS8Q9BT25 410 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 RBM38Q9H0Z9 239 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 DNAJC18Q9H819 358 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ACP6Q9NPH0 428 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CHST7Q9NS84 486 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SACM1LQ9NTJ5 587 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ZDHHC7Q9NXF8 308 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 GIN1Q9NXP7 522 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SCHIP1Q9P0W5 487 aaPredicted RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 TAGLN3Q9UI15 199 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 HERC5Q9UII4 1024 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 PACSIN3Q9UKS6 424 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 NIP7Q9Y221 180 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS50-210ENST00000471188 MON2Q7Z3U7 1717 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 LRRC37A3O60309 1634 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 KAT6AQ92794 2004 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CCDC195A0A1B0GUA6 201 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 A6NL46 340 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 FAM47E-STBD1D6RA91 191 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 I3L4J1 428 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PRPF4O43172 522 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS50-210ENST00000471188 SORBS2O94875 1100 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 KCNA2P16389 499 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 NR4A1P22736 598 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 RRM1P23921 792 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CTNNA2P26232 953 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ARL1P40616 181 aaPredicted RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 GSSP48637 474 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PPATQ06203 517 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CYP2A13Q16696 494 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 RARS2Q5T160 578 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 AAGABQ6PD74 315 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 NSMFQ6X4W1 530 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 VASH1Q7L8A9 365 aaPredicted RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 KIAA2013Q8IYS2 634 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 PPM1KQ8N3J5 372 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 TSPAN14Q8NG11 270 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CAPSLQ8WWF8 208 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 BHMTQ93088 406 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 BORCS5Q969J3 196 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 MAELQ96JY0 434 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 BTBD9Q96Q07 612 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 CGREF1Q99674 301 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 HEMGNQ9BXL5 484 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 MAK16Q9BXY0 300 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 FGFBP2Q9BYJ0 223 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 SIAEQ9HAT2 523 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 ZNF287Q9HBT7 754 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 VTA1Q9NP79 307 aa4.41□□□□□ -1.7
VPS50-210ENST00000471188 DDX56Q9NY93 547 aaKnown RBP4.41□□□□□ -1.7
VPS50-210ENST00000471188 SENP1Q9P0U3 644 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms