RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PLXNA3P51805 1871 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 F8VP50 259 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 RNF225M0QZC1 329 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 SERPINC1P01008 464 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 PAEPP09466 180 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 VDRP11473 427 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 KRT5P13647 590 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ANXA13P27216 316 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ADORA2BP29275 332 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ZNF132P52740 706 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 CACNA2D1P54289 1103 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 EPHA5P54756 1037 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 SYCP1Q15431 976 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 TAF12Q16514 161 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ARHGAP44Q17R89 818 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 PPP1R26Q5T8A7 1209 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 CYP4A22Q5TCH4 519 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ARHGAP17Q68EM7 881 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 SMYD5Q6GMV2 418 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 HS6ST3Q8IZP7 471 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 LEMD2Q8NC56 503 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 GPR152Q8TDT2 470 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 SPATA17Q96L03 361 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 CEP295NLQ96MC4 621 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 NAP1L5Q96NT1 182 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ERGIC2Q96RQ1 377 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 LRRC3Q9BY71 257 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 RTN4Q9NQC3 1192 aaKnown RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 ASAH2Q9NR71 780 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 KRT82Q9NSB4 513 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 PRKAG3Q9UGI9 489 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 AJAP1Q9UKB5 411 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 KIAA1257Q9ULG3 409 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 SIK3Q9Y2K2 1263 aa12.68□□□□□ -0.38
VPS13D-204ENST00000469054 FARP1Q9Y4F1 1045 aaPredicted RBP12.68□□□□□ -0.38
VPS13D-204ENST00000469054 PRUNE2Q8WUY3 3088 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 A0A1B0GTH6 734 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 SLC38A8A6NNN8 435 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 ZNF197O14709 1029 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 TEX33O43247 280 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 AP1G2O75843 785 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 FAM200BP0CF97 657 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 CSH1P0DML2 217 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 CSH2P0DML3 217 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 UCHL3P15374 230 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 CD19P15391 556 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 RFX1P22670 979 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 FSHRP23945 695 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 KLK7P49862 253 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 FANCCQ00597 558 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 SGO2Q562F6 1265 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 PRSS36Q5K4E3 855 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 PDZD4Q76G19 769 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-204ENST00000469054 TMC8Q8IU68 726 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 ADHFE1Q8IWW8 467 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 PLCD3Q8N3E9 789 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 RBBP8NLQ8NC74 664 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-204ENST00000469054 RNF214Q8ND24 703 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 SHC3Q92529 594 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 RPGRIP1Q96KN7 1286 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 KCNK16Q96T55 309 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 NAA15Q9BXJ9 866 aaKnown RBP12.67□□□□□ -0.38
VPS13D-204ENST00000469054 CSNK1G1Q9HCP0 422 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 DMAP1Q9NPF5 467 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-204ENST00000469054 TMEM30AQ9NV96 361 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 USTQ9Y2C2 406 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 MRPS23Q9Y3D9 190 aaKnown RBP12.67□□□□□ -0.38
VPS13D-204ENST00000469054 FHOD1Q9Y613 1164 aa12.67□□□□□ -0.38
VPS13D-204ENST00000469054 FOXN3O00409 490 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 BEST1O76090 585 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 NOL4O94818 638 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MICAL2O94851 1124 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MYL4P12829 197 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 HMGA1P17096 107 aaKnown RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 CCR2P41597 374 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 UBASH3AP57075 661 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MAP3K7CLP57077 242 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 ZP2Q05996 745 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MTMR3Q13615 1198 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 RAPGEF1Q13905 1077 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 DRAP1Q14919 205 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 NR1I3Q14994 352 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 SLC5A9Q2M3M2 681 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 CLEC20AQ6ZU45 233 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 DENND5BQ6ZUT9 1274 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 GET4Q7L5D6 327 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 OTOP3Q7RTS5 596 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 ANKRD52Q8NB46 1076 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 STKLD1Q8NE28 680 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 ZMIZ2Q8NF64 920 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 ITFG1Q8TB96 612 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 TFAP2BQ92481 460 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 MYRFLQ96LU7 910 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 PCMTD1Q96MG8 357 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 SMOQ99835 787 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 DUSP16Q9BY84 665 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 STK33Q9BYT3 514 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 GANQ9H2C0 597 aa12.66□□□□□ -0.38
VPS13D-204ENST00000469054 ZNF334Q9HCZ1 680 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-204ENST00000469054 FAM207AQ9NSI2 230 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms