RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 C9orf43Q8TAL5 461 aaPredicted RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 SMARCC2Q8TAQ2 1214 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 NSUN6Q8TEA1 469 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 RSPH1Q8WYR4 309 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 EZH1Q92800 747 aaPredicted RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 CNDP2Q96KP4 475 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 B3GALT6Q96L58 329 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 FRMD6Q96NE9 622 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 TAAR1Q96RJ0 339 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 P2RY13Q9BPV8 354 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 NIFKQ9BYG3 293 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 DNAJC25Q9H1X3 360 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 PRDM8Q9NQV8 689 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 CHST7Q9NS84 486 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 PPM1HQ9ULR3 514 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 SLC5A6Q9Y289 635 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 A0A0U1RQF3 1178 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 PRSS44E7EML9 344 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 NRP1O14786 923 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 PCDHGA12O60330 932 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 PLA2G6O60733 806 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 CPNE3O75131 537 aaKnown RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 HNRNPLP14866 589 aaKnown RBP eCLIP5.66□□□□□ -1.52e-8■□□□□ 9.1
HMGB1-207ENST00000468384 PTPN2P17706 415 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 SLC6A4P31645 630 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 NOP2P46087 812 aaKnown RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 GALK1P51570 392 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 CREMQ03060 361 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 MRPL49Q13405 166 aaKnown RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 ILKQ13418 452 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 GNL2Q13823 731 aaKnown RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 INAVAQ3KP66 663 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 NOMO2Q5JPE7 1267 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 SYCP2LQ5T4T6 812 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 TMEM214Q6NUQ4 689 aaKnown RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 KCNV1Q6PIU1 500 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 TMEM87BQ96K49 555 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 SLC46A1Q96NT5 459 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 LRRC3BQ96PB8 259 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 SMR3AQ99954 134 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 PDCD2LQ9BRP1 358 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 MARCH5Q9NX47 278 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 BCCIPQ9P287 314 aaKnown RBP eCLIP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 FOXD3Q9UJU5 478 aaPredicted RBP5.66□□□□□ -1.5
HMGB1-207ENST00000468384 INPP5FQ9Y2H2 1132 aa5.66□□□□□ -1.5
HMGB1-207ENST00000468384 VWFP04275 2813 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 TGFBR3LH3BV60 316 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF197O14709 1029 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 DDHD2O94830 711 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 NEFLP07196 543 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 MYCLP12524 364 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 U2AF2P26368 475 aaKnown RBP eCLIP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 PPP2R1AP30153 589 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 IL15P40933 162 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 CCR2P41597 374 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 PLA2G4AP47712 749 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 MCM2P49736 904 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 FOXD4Q12950 439 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ADAM9Q13443 819 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 WDR45BQ5MNZ6 344 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 MEI1Q5TIA1 1274 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 GLB1LQ6UWU2 654 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 GPR65Q8IYL9 337 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF654Q8IZM8 581 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ZCCHC9Q8N567 271 aaKnown RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 RHPN1Q8TCX5 695 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 EPS8L3Q8TE67 593 aaKnown RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 MKL1Q969V6 931 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 CHMP4CQ96CF2 233 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 HVCN1Q96D96 273 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF419Q96HQ0 510 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 RMDN3Q96TC7 470 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 TMEM175Q9BSA9 504 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 TRIM8Q9BZR9 551 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 SRCIN1Q9C0H9 1055 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 C12orf49Q9H741 205 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 SRA1Q9HD15 236 aaKnown RBP5.65□□□□□ -1.5
HMGB1-207ENST00000468384 NDFIP2Q9NV92 336 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 ADAMTS1Q9UHI8 967 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 USP20Q9Y2K6 914 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 PCDHA2Q9Y5H9 948 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 FPGT-TNNI3KV9GXZ4 949 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 HYDINQ4G0P3 5121 aa5.65□□□□□ -1.5
HMGB1-207ENST00000468384 PLXND1Q9Y4D7 1925 aa5.65□□□□□ -1.51
HMGB1-207ENST00000468384 SVEP1Q4LDE5 3571 aa5.65□□□□□ -1.51
HMGB1-207ENST00000468384 CEP192Q8TEP8 1941 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 RRN3P2A6NIE6 340 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 PRR19A6NJB7 356 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 MEIS1O00470 390 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 TNFRSF21O75509 655 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 ALDH1L1O75891 902 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 TGFB3P10600 412 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 MARK3P27448 753 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 C14orf28Q4W4Y0 310 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 NAIF1Q69YI7 327 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 C8orf86Q6ZUL3 223 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 C16orf86Q6ZW13 317 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 HS2ST1Q7LGA3 356 aa5.64□□□□□ -1.51
HMGB1-207ENST00000468384 ENAHQ8N8S7 591 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-207ENST00000468384 NSUN7Q8NE18 718 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms