RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TAP1Q03518 808 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 C1orf220Q5T0J3 134 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 NDUFAF2Q8N183 169 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 EPS8L1Q8TE68 723 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 NDUFA13Q9P0J0 144 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 TTC7AQ9ULT0 858 aaPredicted RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 A8MXQ7 604 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 HGSO14964 777 aaPredicted RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 NCK2O43639 380 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 C4BPAP04003 597 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 ELNP15502 786 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 SELPP16109 830 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 HNRNPH1P31943 449 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 OR1G1P47890 313 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 BTG3Q14201 252 aaPredicted RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 KRT81Q14533 505 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 CXCL17Q6UXB2 119 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 LRRC57Q8N9N7 239 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 GPR88Q9GZN0 384 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 UMODL1Q5DID0 1318 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 CNTNAP2Q9UHC6 1331 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 SNUPNO95149 360 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 NPTXRO95502 500 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 LSM8O95777 96 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 ACADSBP45954 432 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 CLCN3P51790 818 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 RNASE9P60153 205 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 NOP14P78316 857 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 ARHGAP1Q07960 439 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 ACTN3Q08043 901 aaPredicted RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 NR1H3Q13133 447 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 CLEC16AQ2KHT3 1053 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 DNAJC24Q6P3W2 148 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 C15orf39Q6ZRI6 1047 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 TAS1R3Q7RTX0 852 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 NOA1Q8NC60 698 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 SYT11Q9BT88 431 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 CELF4Q9BZC1 486 aaKnown RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 ZNF518BQ9C0D4 1074 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 NIF3L1Q9GZT8 377 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 WDR35Q9P2L0 1181 aa8.03□□□□□ -1.12
USP54-210ENST00000466048 AJAP1Q9UKB5 411 aaPredicted RBP8.03□□□□□ -1.12
USP54-210ENST00000466048 ZNF185O15231 689 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 ADCY6O43306 1168 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 SGPL1O95470 568 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 CYP1A2P05177 515 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 SMIM10L2AP0DMW4 78 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 SMIM10L2BP0DMW5 78 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 SERPINB6P35237 376 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 ALDH1A3P47895 512 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 HSDL1Q3SXM5 330 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 SGO2Q562F6 1265 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 FAM133BQ5BKY9 247 aaKnown RBP8.02□□□□□ -1.12
USP54-210ENST00000466048 ZNF280DQ6N043 979 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 IFNLR1Q8IU57 520 aaPredicted RBP8.02□□□□□ -1.12
USP54-210ENST00000466048 ZNF564Q8TBZ8 553 aaPredicted RBP8.02□□□□□ -1.12
USP54-210ENST00000466048 PSMB7Q99436 277 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 OXCT2Q9BYC2 517 aaPredicted RBP8.02□□□□□ -1.12
USP54-210ENST00000466048 EPN3Q9H201 632 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 FZD8Q9H461 694 aa8.02□□□□□ -1.12
USP54-210ENST00000466048 ZNF286BP0CG31 522 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 GJA5P36382 358 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 NNMTP40261 264 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 ARL4AP40617 200 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 PTK7Q13308 1070 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 UAP1Q16222 522 aaPredicted RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 SCN4BQ8IWT1 228 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 ANKLE1Q8NAG6 615 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 PLEKHO2Q8TD55 490 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 KREMEN1Q96MU8 473 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 OSBPL1AQ9BXW6 950 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 NOCTQ9UK39 431 aaKnown RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 AGAP1Q9UPQ3 857 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 ARIH2O95376 493 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 PGK1P00558 417 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 MMP3P08254 477 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 GSTA2P09210 222 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 EIF4BP23588 611 aaKnown RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 SFSWAPQ12872 951 aaKnown RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 LRRC31Q6UY01 552 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 DLK2Q6UY11 383 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 CCNI2Q6ZMN8 369 aaPredicted RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 NT5DC3Q86UY8 548 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 ERICH1Q86X53 443 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 DNAJB3Q8WWF6 145 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 SEMA4DQ92854 862 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 SGSM3Q96HU1 749 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 HES6Q96HZ4 224 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 KRT12Q99456 494 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 NUP85Q9BW27 656 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 HIPK3Q9H422 1215 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 CNOT8Q9UFF9 292 aaKnown RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 NOVA2Q9UNW9 492 aaKnown RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 B4GALT4O60513 344 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 SPAG7O75391 227 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 GNA15P30679 374 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 VSNL1P62760 191 aa8.02□□□□□ -1.13
USP54-210ENST00000466048 BEND6Q5SZJ8 279 aaPredicted RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 ACBD5Q5T8D3 534 aaPredicted RBP8.02□□□□□ -1.13
USP54-210ENST00000466048 NOP9Q86U38 636 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms