RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ZNF667Q5HYK9 610 aa23.24■■□□□ 1.31
LIME1-203ENST00000465591 VSTM1Q6UX27 236 aa23.24■■□□□ 1.31
LIME1-203ENST00000465591 FRMD5Q7Z6J6 570 aa23.24■■□□□ 1.31
LIME1-203ENST00000465591 YAF2Q8IY57 180 aa23.24■■□□□ 1.31
LIME1-203ENST00000465591 MAML2Q8IZL2 1156 aaPredicted RBP23.24■■□□□ 1.31
LIME1-203ENST00000465591 USP13Q92995 863 aaPredicted RBP23.24■■□□□ 1.31
LIME1-203ENST00000465591 OBP2AQ9NY56 170 aa23.24■■□□□ 1.31
LIME1-203ENST00000465591 GOLGA6L4A6NEF3 574 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 A8MXQ7 604 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 CLDN5O00501 218 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 DPYSL4O14531 572 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 MAPK13O15264 365 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 VAMP7P51809 220 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 FAM160A1Q05DH4 1040 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 PPP3CAQ08209 521 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 SPOPLQ6IQ16 392 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 MON1AQ86VX9 555 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 C1orf210Q8IVY1 113 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 TTC8Q8TAM2 541 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 BPIFB1Q8TDL5 484 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 CLDN23Q96B33 292 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 EEF2KMTQ96G04 330 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 SLC22A12Q96S37 553 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 B3GNT5Q9BYG0 378 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 ZNF518BQ9C0D4 1074 aa23.23■■□□□ 1.31
LIME1-203ENST00000465591 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.23■■□□□ 1.317e-7■■■■■ 94.2
LIME1-203ENST00000465591 NDRG2Q9UN36 371 aaKnown RBP23.23■■□□□ 1.31
LIME1-203ENST00000465591 FAM186AA6NE01 2351 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 PROB1E7EW31 1015 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 IKBKBO14920 756 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 HLA-DRAP01903 254 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 GRIK1P39086 918 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 TNK2Q07912 1038 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 FAM186BQ8IYM0 893 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 B3GALNT2Q8NCR0 500 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 MRPS31Q92665 395 aaKnown RBP23.22■■□□□ 1.31
LIME1-203ENST00000465591 SPATA17Q96L03 361 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 BCO2Q9BYV7 579 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 GTSE1Q9NYZ3 720 aa23.22■■□□□ 1.31
LIME1-203ENST00000465591 UXTQ9UBK9 157 aaPredicted RBP23.22■■□□□ 1.31
LIME1-203ENST00000465591 PTPRZ1P23471 2315 aaPredicted RBP23.22■■□□□ 1.31
LIME1-203ENST00000465591 F8VP50 259 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 CLSTN1O94985 981 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 ASS1P00966 412 aaKnown RBP23.21■■□□□ 1.31
LIME1-203ENST00000465591 CCNE1P24864 410 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 DDX6P26196 483 aaKnown RBP eCLIP23.21■■□□□ 1.31
LIME1-203ENST00000465591 PRCPP42785 496 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 GCLMP48507 274 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 ADAM9Q13443 819 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 ARHGAP29Q52LW3 1261 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 CELF5Q8N6W0 485 aaKnown RBP23.21■■□□□ 1.31
LIME1-203ENST00000465591 SPATA20Q8TB22 786 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 FAM3CQ92520 227 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 CYP2S1Q96SQ9 504 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 NELL2Q99435 816 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 HMGXB4Q9UGU5 601 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 PCDHA5Q9Y5H7 936 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 HELZP42694 1942 aaKnown RBP23.21■■□□□ 1.31
LIME1-203ENST00000465591 MYH10P35580 1976 aa23.21■■□□□ 1.31
LIME1-203ENST00000465591 MAN2B1O00754 1011 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 AVPR1AP37288 418 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 ORC1Q13415 861 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 SGSM1Q2NKQ1 1148 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 WDR44Q5JSH3 913 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 TXNDC11Q6PKC3 985 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 PAQR9Q6ZVX9 377 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 INTS8Q75QN2 995 aaKnown RBP23.2■■□□□ 1.3
LIME1-203ENST00000465591 ASCL5Q7RTU5 278 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 CSGALNACT1Q8TDX6 532 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 TAS1R2Q8TE23 839 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 TRPC7Q9HCX4 862 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 SPATA6Q9NWH7 488 aaPredicted RBP23.2■■□□□ 1.3
LIME1-203ENST00000465591 ZMYM5Q9UJ78 669 aa23.2■■□□□ 1.3
LIME1-203ENST00000465591 MRPS17Q9Y2R5 130 aaKnown RBP23.2■■□□□ 1.3
LIME1-203ENST00000465591 C2orf78A6NCI8 922 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 SP9P0CG40 484 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 RPL13P26373 211 aaKnown RBP23.19■■□□□ 1.3
LIME1-203ENST00000465591 PSMC2P35998 433 aaKnown RBP23.19■■□□□ 1.3
LIME1-203ENST00000465591 PIK3CAP42336 1068 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 ASPAP45381 313 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 PMS1P54277 932 aaKnown RBP23.19■■□□□ 1.3
LIME1-203ENST00000465591 EDRF1Q3B7T1 1238 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 ZNF658Q5TYW1 1059 aaPredicted RBP23.19■■□□□ 1.3
LIME1-203ENST00000465591 DENND5BQ6ZUT9 1274 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 CCDC34Q96HJ3 373 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 C8orf48Q96LL4 319 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 GSDMAQ96QA5 445 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 MMRN2Q9H8L6 949 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 APOBEC3GQ9HC16 384 aaKnown RBP23.19■■□□□ 1.3
LIME1-203ENST00000465591 TDP1Q9NUW8 608 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 GCNT4Q9P109 453 aa23.19■■□□□ 1.3
LIME1-203ENST00000465591 SOBPA7XYQ1 873 aa23.18■■□□□ 1.3
LIME1-203ENST00000465591 TRIM66O15016 1216 aa23.18■■□□□ 1.3
LIME1-203ENST00000465591 GFRA3O60609 400 aa23.18■■□□□ 1.3
LIME1-203ENST00000465591 GADD45BO75293 160 aaPredicted RBP23.18■■□□□ 1.3
LIME1-203ENST00000465591 ANXA13P27216 316 aa23.18■■□□□ 1.3
LIME1-203ENST00000465591 RPS9P46781 194 aaKnown RBP23.18■■□□□ 1.3
LIME1-203ENST00000465591 KPNA1P52294 538 aaPredicted RBP23.18■■□□□ 1.3
LIME1-203ENST00000465591 MCCD1P59942 119 aaPredicted RBP23.18■■□□□ 1.3
LIME1-203ENST00000465591 TRIM68Q6AZZ1 485 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms