RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 KREMEN1Q96MU8 473 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 RPP25Q9BUL9 199 aaKnown RBP12.4□□□□□ -0.42
CUX1-207ENST00000465461 NT5C1AQ9BXI3 368 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 VPS16Q9H269 839 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 HSD3B7Q9H2F3 369 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 NDST4Q9H3R1 872 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 ABCB6Q9NP58 842 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 CDH7Q9ULB5 785 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 USTQ9Y2C2 406 aa12.4□□□□□ -0.42
CUX1-207ENST00000465461 PTPRDP23468 1912 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 PTMSP20962 102 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 GABRR2P28476 465 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 MAGEA11P43364 429 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 EPHA5P54756 1037 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 MAP3K7CLP57077 242 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 USP46P62068 366 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 RPL10AP62906 217 aaKnown RBP12.39□□□□□ -0.43
CUX1-207ENST00000465461 KCNMA1Q12791 1236 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 KRT31Q15323 416 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 ZSCAN23Q3MJ62 389 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 PPP1R26Q5T8A7 1209 aaPredicted RBP12.39□□□□□ -0.43
CUX1-207ENST00000465461 PARM1Q6UWI2 310 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 ITIH5Q86UX2 942 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 DHX40Q8IX18 779 aaKnown RBP12.39□□□□□ -0.43
CUX1-207ENST00000465461 ZDHHC14Q8IZN3 488 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 UBR7Q8N806 425 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 JAKMIP2Q96AA8 810 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 CYFIP2Q96F07 1278 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 TMEM176AQ96HP8 235 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 SMOQ99835 787 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 ATXN3LQ9H3M9 355 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 EPHX3Q9H6B9 360 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 IL21Q9HBE4 155 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 UBE2TQ9NPD8 197 aaPredicted RBP12.39□□□□□ -0.43
CUX1-207ENST00000465461 KRT82Q9NSB4 513 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.39□□□□□ -0.43
CUX1-207ENST00000465461 AJAP1Q9UKB5 411 aaPredicted RBP12.39□□□□□ -0.43
CUX1-207ENST00000465461 ASB3Q9Y575 518 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 PCDHB4Q9Y5E5 795 aa12.39□□□□□ -0.43
CUX1-207ENST00000465461 VCANP13611 3396 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 DOCK8Q8NF50 2099 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 ZNF197O14709 1029 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 AP1G2O75843 785 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 LETM1O95202 739 aaPredicted RBP12.38□□□□□ -0.43
CUX1-207ENST00000465461 ATP1A3P13637 1013 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 ACO1P21399 889 aaKnown RBP12.38□□□□□ -0.43
CUX1-207ENST00000465461 EEF1GP26641 437 aaKnown RBP12.38□□□□□ -0.43
CUX1-207ENST00000465461 PON1P27169 355 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 ANXA13P27216 316 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 KLK7P49862 253 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 EXOC3L4Q17RC7 722 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 TRIM65Q6PJ69 517 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 TMEM270Q6UE05 265 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 VSTM1Q6UX27 236 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 GBP6Q6ZN66 633 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 TMEM150AQ86TG1 271 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 PLCD3Q8N3E9 789 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 ZMIZ2Q8NF64 920 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 FGF14Q92915 247 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 KCNK12Q9HB15 430 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 SIX2Q9NPC8 291 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 AVENQ9NQS1 362 aaPredicted RBP12.38□□□□□ -0.43
CUX1-207ENST00000465461 EPS15L1Q9UBC2 864 aa12.38□□□□□ -0.43
CUX1-207ENST00000465461 TRIM66O15016 1216 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 NARSO43776 548 aaKnown RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 TADA3O75528 432 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 NOL4O94818 638 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 F11P03951 625 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 CSH1P0DML2 217 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 CSH2P0DML3 217 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 CDK11BP21127 795 aaKnown RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 TBXAS1P24557 533 aaPredicted RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 ZNF165P49910 485 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 PTPN21Q16825 1174 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 ARHGAP44Q17R89 818 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 SKOR2Q2VWA4 1001 aaPredicted RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 FAM78AQ5JUQ0 283 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 GPR158Q5T848 1215 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 DPY19L2P1Q6NXN4 242 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 SCAMP5Q8TAC9 235 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 SMARCD1Q96GM5 515 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 FAXDC2Q96IV6 333 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 C8orf48Q96LL4 319 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 HNRNPABQ99729 332 aaKnown RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 KXD1Q9BQD3 176 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 PLA2G2FQ9BZM2 168 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 SMG9Q9H0W8 520 aaKnown RBP12.37□□□□□ -0.43
CUX1-207ENST00000465461 SLITRK6Q9H5Y7 841 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 NUMBLQ9Y6R0 609 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 MYO10Q9HD67 2058 aa12.37□□□□□ -0.43
CUX1-207ENST00000465461 ANHXE9PGG2 379 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 FAM200BP0CF97 657 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 PNMA6AP0CW24 399 aaPredicted RBP12.36□□□□□ -0.43
CUX1-207ENST00000465461 KRT5P13647 590 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 CD19P15391 556 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 ZNF18P17022 549 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 BRD2P25440 801 aaKnown RBP12.36□□□□□ -0.43
CUX1-207ENST00000465461 VIPR2P41587 438 aa12.36□□□□□ -0.43
CUX1-207ENST00000465461 COPB1P53618 953 aaKnown RBP12.36□□□□□ -0.43
CUX1-207ENST00000465461 HTR4Q13639 388 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms