RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 GJA8P48165 433 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 RTP1P59025 263 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 BASP1P80723 227 aaKnown RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 THEMIS2Q5TEJ8 643 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 RNF43Q68DV7 783 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 IZUMO2Q6UXV1 221 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 FRA10AC1Q70Z53 315 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 APTXQ7Z2E3 356 aaKnown RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 SCUBE1Q8IWY4 988 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 SHCBP1Q8NEM2 672 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF564Q8TBZ8 553 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 TRIM63Q969Q1 353 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 MRPL4Q9BYD3 311 aaKnown RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 ATAD3AQ9NVI7 634 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 DNAJC17Q9NVM6 304 aaKnown RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 APEX2Q9UBZ4 518 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 LZTS1Q9Y250 596 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 SIK3Q9Y2K2 1263 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 EMSYQ7Z589 1322 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 A0A0A6YYK5 440 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 TMEM88BA6NKF7 163 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 IRF6O14896 467 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 AKAP3O75969 853 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 IL10P22301 178 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 ICAM3P32942 547 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 NAMPTP43490 491 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 CENPCQ03188 943 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 LAMC2Q13753 1193 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 NDUFA5Q16718 116 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 KYAT1Q16773 422 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 PARP6Q2NL67 630 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 OLFML1Q6UWY5 402 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 RAB44Q7Z6P3 723 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 LENG1Q96BZ8 264 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 NRDE2Q9H7Z3 1164 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 COL20A1Q9P218 1284 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 STX18Q9P2W9 335 aaKnown RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 TLK1Q9UKI8 766 aa6.47□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF214Q9UL59 606 aaPredicted RBP6.47□□□□□ -1.37
VPS13D-202ENST00000460333 A0A0G2JLL6 359 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 RNF103-CHMP3A0A140T963 221 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 SYCE1LA8MT33 242 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 H0Y626 953 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 MAGEB2O15479 319 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 HBP1O60381 514 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 RTN3O95197 1032 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 TRIM16O95361 564 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 GH1P01241 217 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 ZCCHC18P0CG32 403 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 HNRNPH3P31942 346 aaKnown RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 NPTX2P47972 431 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 KLK7P49862 253 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 MAPK7Q13164 816 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF211Q13398 564 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 DRAP1Q14919 205 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 ERMARDQ5T6L9 678 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 MEI1Q5TIA1 1274 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 ARMCX6Q7L4S7 300 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 PRRT2Q7Z6L0 340 aaPredicted RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 TRPC4APQ8TEL6 797 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 C17orf50Q8WW18 174 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 SCG3Q8WXD2 468 aaKnown RBP6.46□□□□□ -1.37
VPS13D-202ENST00000460333 WHRNQ9P202 907 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 UVRAGQ9P2Y5 699 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 STRIP2Q9ULQ0 834 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 CDK5RAP2Q96SN8 1893 aa6.46□□□□□ -1.37
VPS13D-202ENST00000460333 GOLGA8IPA6NC78 632 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 GOLGA8JA6NMD2 632 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CLDN3O15551 220 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TOMM70O94826 608 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TNFAIP8O95379 198 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PON1P27169 355 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PHKA2P46019 1235 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 GCLMP48507 274 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CDC42EP1Q00587 391 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TNFAIP2Q03169 654 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PDIA2Q13087 525 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 INPP5AQ14642 412 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SNRNP35Q16560 246 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 KSR1Q8IVT5 923 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 C12orf56Q8IXR9 622 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 FBXL13Q8NEE6 735 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TMC2Q8TDI7 906 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 NMD3Q96D46 503 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 BTBD6Q96KE9 485 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 BTBD10Q9BSF8 475 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 KLC2Q9H0B6 622 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 ST6GALNAC4Q9H4F1 302 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 MANSC1Q9H8J5 431 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 DDX56Q9NY93 547 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 AGO2Q9UKV8 859 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 INO80B-WBP1J3KQ70 363 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PJA2O43164 708 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CA12O43570 354 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 LRRN2O75325 713 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 GLI1P08151 1106 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM191BP0C7N4 346 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM49P0CI25 452 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms