RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 INTS8Q75QN2 995 aaKnown RBP22.64■■□□□ 1.21
HMGB3-205ENST00000455596 SV2AQ7L0J3 742 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 C1orf210Q8IVY1 113 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 ENGASEQ8NFI3 743 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 SPATA17Q96L03 361 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 LRRC3BQ96PB8 259 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 DPEP3Q9H4B8 488 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 SMYD3Q9H7B4 428 aa22.64■■□□□ 1.21
HMGB3-205ENST00000455596 SHISA7A6NL88 538 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 PROB1E7EW31 1015 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 AKAP3O75969 853 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 KRT13P13646 458 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 P4HA1P13674 534 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 PSMC2P35998 433 aaKnown RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 MLLT6P55198 1093 aaPredicted RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 EDRF1Q3B7T1 1238 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 MON1AQ86VX9 555 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 FAM186BQ8IYM0 893 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 SMYD4Q8IYR2 804 aaPredicted RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 B3GALNT2Q8NCR0 500 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 FAM3CQ92520 227 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 TAF4BQ92750 862 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 CLDN23Q96B33 292 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 MSANTD3Q96H12 275 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 GSDMAQ96QA5 445 aa22.63■■□□□ 1.21
HMGB3-205ENST00000455596 SMG9Q9H0W8 520 aaKnown RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 THG1LQ9NWX6 298 aaKnown RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 HOOK1Q9UJC3 728 aaKnown RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 NDRG2Q9UN36 371 aaKnown RBP22.63■■□□□ 1.21
HMGB3-205ENST00000455596 TADA3O75528 432 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 PIK3CAP42336 1068 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 RAP1GAPP47736 663 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 CDH8P55286 799 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 PLCB2Q00722 1185 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 ENPEPQ07075 957 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 ZCWPW2Q504Y3 356 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 C1orf220Q5T0J3 134 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 SCARA5Q6ZMJ2 495 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 ZFYVE19Q96K21 471 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 TIGD1Q96MW7 591 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 KIF9Q9HAQ2 790 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 TDP1Q9NUW8 608 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 SPATA6Q9NWH7 488 aaPredicted RBP22.62■■□□□ 1.21
HMGB3-205ENST00000455596 EHD2Q9NZN4 543 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 CACNA1IQ9P0X4 2223 aa22.62■■□□□ 1.21
HMGB3-205ENST00000455596 SMC2O95347 1197 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 RPS9P46781 194 aaKnown RBP22.61■■□□□ 1.21
HMGB3-205ENST00000455596 KPNA1P52294 538 aaPredicted RBP22.61■■□□□ 1.21
HMGB3-205ENST00000455596 ZNF658Q5TYW1 1059 aaPredicted RBP22.61■■□□□ 1.21
HMGB3-205ENST00000455596 C1orf228Q6PIY5 440 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 DENND5BQ6ZUT9 1274 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 ELMO3Q96BJ8 720 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 TNIP3Q96KP6 325 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 C8orf48Q96LL4 319 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 ELOVL4Q9GZR5 314 aa22.61■■□□□ 1.21
HMGB3-205ENST00000455596 C8orf33Q9H7E9 229 aaPredicted RBP22.61■■□□□ 1.21
HMGB3-205ENST00000455596 CACNA1HO95180 2353 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 ASS1P00966 412 aaKnown RBP22.6■■□□□ 1.21
HMGB3-205ENST00000455596 HLA-DRAP01903 254 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 TRIM49P0CI25 452 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 TRIM49CP0CI26 452 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 CCNE1P24864 410 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 FRMD5Q7Z6J6 570 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 USP13Q92995 863 aaPredicted RBP22.6■■□□□ 1.21
HMGB3-205ENST00000455596 SMARCE1Q969G3 411 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 B3GNT5Q9BYG0 378 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 IMPG2Q9BZV3 1241 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 SDCBP2Q9H190 292 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 TRPC7Q9HCX4 862 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 GTSE1Q9NYZ3 720 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 CCL26Q9Y258 94 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 PCDHA5Q9Y5H7 936 aa22.6■■□□□ 1.21
HMGB3-205ENST00000455596 ATP8B3O60423 1300 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 TRAV19A0A0A6YYK7 116 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 F8VP50 259 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 LAMTOR5O43504 91 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 GFRA3O60609 400 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 PRCPP42785 496 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 FZD5Q13467 585 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 ZNF268Q14587 947 aaPredicted RBP22.59■■□□□ 1.21
HMGB3-205ENST00000455596 COBLL1Q53SF7 1204 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 ZNF687Q8N1G0 1237 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 SPATA20Q8TB22 786 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 GTPBP4Q9BZE4 634 aaKnown RBP22.59■■□□□ 1.21
HMGB3-205ENST00000455596 ZNF518BQ9C0D4 1074 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 MYO16Q9Y6X6 1858 aa22.59■■□□□ 1.21
HMGB3-205ENST00000455596 CLDN5O00501 218 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 CETN3O15182 167 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 USP17L7P0C7H9 530 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 SP9P0CG40 484 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 SOX9P48436 509 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 GCLMP48507 274 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 NOP14P78316 857 aaKnown RBP22.58■■□□□ 1.21
HMGB3-205ENST00000455596 PPP3CAQ08209 521 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 SPOPLQ6IQ16 392 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 RALGPS2Q86X27 583 aaPredicted RBP22.58■■□□□ 1.21
HMGB3-205ENST00000455596 TTC8Q8TAM2 541 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 ERCC4Q92889 916 aaPredicted RBP22.58■■□□□ 1.21
HMGB3-205ENST00000455596 TSG101Q99816 390 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 MED10Q9BTT4 135 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms