RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NDRG1Q92597 394 aaKnown RBP12.56□□□□□ -0.4
SMPD4-213ENST00000454468 SLC13A1Q9BZW2 595 aa12.56□□□□□ -0.4
SMPD4-213ENST00000454468 SNX25Q9H3E2 840 aa12.56□□□□□ -0.4
SMPD4-213ENST00000454468 CXorf56Q9H5V9 222 aa12.56□□□□□ -0.4
SMPD4-213ENST00000454468 ASNSD1Q9NWL6 643 aa12.56□□□□□ -0.4
SMPD4-213ENST00000454468 CPSF3Q9UKF6 684 aaKnown RBP12.56□□□□□ -0.4
SMPD4-213ENST00000454468 TIMM13Q9Y5L4 95 aaPredicted RBP12.56□□□□□ -0.4
SMPD4-213ENST00000454468 CAPN9O14815 690 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 AVILO75366 819 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 EFTUD2Q15029 972 aaKnown RBP eCLIP12.55□□□□□ -0.41e-6■■■■■ 35.4
SMPD4-213ENST00000454468 PLEKHA7Q6IQ23 1121 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 SPOCK2Q92563 424 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 RNF34Q969K3 372 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 C18orf25Q96B23 403 aaPredicted RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 NT5C1AQ9BXI3 368 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 PNMA3Q9UL41 463 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 LIASO43766 372 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 INHBAP08476 426 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 HOXC6P09630 235 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ICAM3P32942 547 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 AP3M2P53677 418 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 GDF10P55107 478 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 RBP5P82980 135 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 BEX3Q00994 111 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 LTBP1Q14766 1721 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 SIX1Q15475 284 aaPredicted RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 PHF13Q86YI8 300 aaPredicted RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 KATNAL2Q8IYT4 538 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ELOVL4Q9GZR5 314 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 RPSAP08865 295 aaKnown RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ZBTB48P10074 688 aaPredicted RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 CYP2C9P11712 490 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 KRT4P19013 534 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 SAT1P21673 171 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 IL1R2P27930 398 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 DRG2P55039 364 aaKnown RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ARL4CP56559 192 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 PTK6Q13882 451 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ZC3H12AQ5D1E8 599 aaKnown RBP12.55□□□□□ -0.4
SMPD4-213ENST00000454468 UNC45BQ8IWX7 931 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 KLHL29Q96CT2 875 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 CD248Q9HCU0 757 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 ABCF3Q9NUQ8 709 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 SUFUQ9UMX1 484 aa12.55□□□□□ -0.4
SMPD4-213ENST00000454468 CCDC195A0A1B0GUA6 201 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 EIF4E1BA6NMX2 242 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 MYCP01106 439 aaPredicted RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 HADHBP55084 474 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 LAMC2Q13753 1193 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 SETDB1Q15047 1291 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 KCNV1Q6PIU1 500 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 C15orf39Q6ZRI6 1047 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 MAP7D3Q8IWC1 876 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 FBXO36Q8NEA4 188 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 GIMAP7Q8NHV1 300 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 DNAJB3Q8WWF6 145 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ADAMTS5Q9UNA0 930 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 A0A0G2JND7 137 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 PPEF2O14830 753 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 LRCH4O75427 683 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 NUDT17P0C025 328 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 HNRNPH1P31943 449 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 VCPP55072 806 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ROR1Q01973 937 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 TNFAIP2Q03169 654 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 GRIK4Q16099 956 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ERMARDQ5T6L9 678 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 KAT2BQ92831 832 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 PGM2Q96G03 612 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ATXN7L3BQ96GX2 97 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 PIWIL1Q96J94 861 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 SDCBP2Q9H190 292 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 PPP2R3BQ9Y5P8 575 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 CXCL11O14625 94 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 MT-ND3P03897 115 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 CCDC130P13994 396 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 PHBP35232 272 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ATXN1P54253 815 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 CNGA2Q16280 664 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 ANKRD22Q5VYY1 191 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 RPAINQ86UA6 219 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 FAM131BQ86XD5 332 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 EXOC8Q8IYI6 725 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 EIF1ADQ8N9N8 165 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 C3orf20Q8ND61 904 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 FAM172AQ8WUF8 416 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 SLCO1B3Q9NPD5 702 aa12.54□□□□□ -0.4
SMPD4-213ENST00000454468 DDX56Q9NY93 547 aaKnown RBP12.54□□□□□ -0.4
SMPD4-213ENST00000454468 FOCADQ5VW36 1801 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 A0A1W2PPM1 405 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 MTA2O94776 668 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 KITP10721 976 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 CETPP11597 493 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 DRD4P21917 467 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 RAD23BP54727 409 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 ZNF200P98182 395 aaPredicted RBP12.53□□□□□ -0.4
SMPD4-213ENST00000454468 CAV1Q03135 178 aa12.53□□□□□ -0.4
SMPD4-213ENST00000454468 SPATS2Q86XZ4 545 aaKnown RBP12.53□□□□□ -0.4
SMPD4-213ENST00000454468 WDTC1Q8N5D0 677 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms