RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 UNKLQ9H9P5 680 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM8AQ9HCN3 771 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PDE7BQ9NP56 450 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PRDM8Q9NQV8 689 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM140Q9NV12 185 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ALKBH4Q9NXW9 302 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NDUFAF4Q9P032 175 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PPIEQ9UNP9 301 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DNAJC16Q9Y2G8 782 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PCDHB4Q9Y5E5 795 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A1W2PQ09 198 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NOL3O60936 208 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PRLP01236 227 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NFICP08651 508 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PCP11498 1178 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FDPSP14324 419 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TACR1P25103 407 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RGS2P41220 211 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GPR15P49685 360 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CCT4P50991 539 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MLLT6P55198 1093 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 IL1RL1Q01638 556 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NSUN2Q08J23 767 aaKnown RBP eCLIP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CTBP1Q13363 440 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NFE2L1Q14494 772 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MED22Q15528 200 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ANKDD1AQ495B1 522 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF805Q5CZA5 627 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMTC4Q5T4D3 741 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ATXN7L2Q5T6C5 722 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 NAA35Q5VZE5 725 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DZIP1Q86YF9 867 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MFSD4AQ8N468 514 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 USP38Q8NB14 1042 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SMG8Q8ND04 991 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 LILRB1Q8NHL6 650 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CREB3L4Q8TEY5 395 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MRPS27Q92552 414 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SMARCE1Q969G3 411 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 Q96M66 194 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RANBP17Q9H2T7 1088 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TRPV4Q9HBA0 871 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TBCCD1Q9NVR7 557 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 EHD2Q9NZN4 543 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CALCOCO1Q9P1Z2 691 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 LPAR3Q9UBY5 353 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF70Q9UC06 446 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FTSJ1Q9UET6 329 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ZC3H7BQ9UGR2 993 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GGA1Q9UJY5 639 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DUSP12Q9UNI6 340 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RIMBP3CA6NJZ7 1639 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RIMBP3BA6NNM3 1639 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RIMBP3Q9UFD9 1639 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 COL17A1Q9UMD9 1497 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 BAZ1AQ9NRL2 1556 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM233B4DJY2 109 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SEPT4O43236 478 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RGS10O43665 173 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PHF2O75151 1096 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GPR32O75388 356 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GLP2RO95838 553 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 VIPP01282 170 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 C4BPAP04003 597 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CELA3BP08861 270 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 LAMP2P13473 410 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PECAM1P16284 738 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 EGR1P18146 543 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MSX2P35548 267 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FLT3LGP49771 235 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ALDH3A2P51648 485 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RRP1P56182 461 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TARDBPQ13148 414 aaKnown RBP eCLIP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 RCN2Q14257 317 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ACAP1Q15027 740 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TAF7Q15545 349 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 GRIK5Q16478 980 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SMU1Q2TAY7 513 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 DCAF12L1Q5VU92 463 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CACHD1Q5VU97 1274 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CAVIN1Q6NZI2 390 aaKnown RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TATDN1Q6P1N9 297 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 PLBD1Q6P4A8 553 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 TMEM154Q6P9G4 183 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 USP17L6PQ6QN14 398 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 KDELC1Q6UW63 502 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ZPBP2Q6X784 338 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM83HQ6ZRV2 1179 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 BBS12Q6ZW61 710 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC28AQ8IWP9 274 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 ULK2Q8IYT8 1036 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 AOPEPQ8N6M6 819 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 LINC00116Q8NCU8 138 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 SAT2Q96F10 170 aaPredicted RBP2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 BICD1Q96G01 975 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 AK8Q96MA6 479 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 KRT23Q9C075 422 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 AP5M1Q9H0R1 490 aa2.51□□□□□ -2.01
CCDC88A-208ENST00000444458 MRPL46Q9H2W6 279 aaKnown RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms