RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 OR6B2Q6IFH4 312 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 ZNF598Q86UK7 904 aaKnown RBP22.25■■□□□ 1.15
PTPRF-207ENST00000436724 CCDC50Q8IVM0 306 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 ARFGAP1Q8N6T3 406 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 GDF3Q9NR23 364 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 PSD3Q9NYI0 1048 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 VPS18Q9P253 973 aa22.25■■□□□ 1.15
PTPRF-207ENST00000436724 TDRD15B5MCY1 1934 aaKnown RBP22.24■■□□□ 1.15
PTPRF-207ENST00000436724 RARAP10276 462 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 CDK7P50613 346 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 KIAA0319Q5VV43 1072 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 SCUBE3Q8IX30 993 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 B3GALNT2Q8NCR0 500 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 HASPINQ8TF76 798 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 CASKIN2Q8WXE0 1202 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 IFT81Q8WYA0 676 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 BEGAINQ9BUH8 593 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 B3GNT5Q9BYG0 378 aa22.24■■□□□ 1.15
PTPRF-207ENST00000436724 PAK6Q9NQU5 681 aaPredicted RBP22.24■■□□□ 1.15
PTPRF-207ENST00000436724 PI4K2BG5E9Z4 385 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 DNM1LO00429 736 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 TAF5Q15542 800 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 RNF25Q96BH1 459 aaPredicted RBP22.23■■□□□ 1.15
PTPRF-207ENST00000436724 PGBD4Q96DM1 585 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 HEMGNQ9BXL5 484 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 SLITRK6Q9H5Y7 841 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 VIPAS39Q9H9C1 493 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 RGS18Q9NS28 235 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 FAN1Q9Y2M0 1017 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 GABRDO14764 452 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 CLUL1Q15846 466 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 TRNP1Q6NT89 227 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 TTC27Q6P3X3 843 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 DSTYKQ6XUX3 929 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 LRRC8DQ7L1W4 858 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 FAM126BQ8IXS8 530 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 IFT20Q8IY31 132 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 KATNAL2Q8IYT4 538 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 NIPA2Q8N8Q9 360 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 TNIP3Q96KP6 325 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 PLVAPQ9BX97 442 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 RNF208Q9H0X6 261 aa22.23■■□□□ 1.15
PTPRF-207ENST00000436724 C9IYK1 514 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 F8W810 466 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 CLDN5O00501 218 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 LRCH4O75427 683 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 B3GAT3O94766 335 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 RALAP11233 206 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 TIGD5Q53EQ6 642 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 ZFYVE27Q5T4F4 411 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 DDX42Q86XP3 938 aaKnown RBP eCLIP22.22■■□□□ 1.15
PTPRF-207ENST00000436724 ANKRD52Q8NB46 1076 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 RUBCNQ92622 972 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 MAGOHBQ96A72 148 aaKnown RBP22.22■■□□□ 1.15
PTPRF-207ENST00000436724 TRIM51Q9BSJ1 452 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 SLC4A5Q9BY07 1137 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 MIS12Q9H081 205 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 DDX43Q9NXZ2 648 aaKnown RBP22.22■■□□□ 1.15
PTPRF-207ENST00000436724 NFU1Q9UMS0 254 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 FSCN2O14926 492 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 PHF2O75151 1096 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 HNRNPH2P55795 449 aaKnown RBP22.22■■□□□ 1.15
PTPRF-207ENST00000436724 MAP9Q49MG5 647 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 CCDC26Q8TAB7 109 aa22.22■■□□□ 1.15
PTPRF-207ENST00000436724 AENQ8WTP8 325 aaKnown RBP22.22■■□□□ 1.15
PTPRF-207ENST00000436724 PAPSS1O43252 624 aaPredicted RBP22.21■■□□□ 1.15
PTPRF-207ENST00000436724 HSPA6P17066 643 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 RPL9P32969 192 aaKnown RBP22.21■■□□□ 1.15
PTPRF-207ENST00000436724 FLT3P36888 993 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 TNNT3P45378 269 aaPredicted RBP22.21■■□□□ 1.15
PTPRF-207ENST00000436724 BRCC3P46736 316 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 BST2Q10589 180 aaKnown RBP22.21■■□□□ 1.15
PTPRF-207ENST00000436724 GRIK3Q13003 919 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 GPNMBQ14956 572 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 RAB6CQ53S08 254 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 SH3PXD2AQ5TCZ1 1133 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 SLC24A5Q71RS6 500 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 MAATS1Q7Z4T9 603 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 TMEM110Q86TL2 294 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 FUKQ8N0W3 1084 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 FAM71BQ8TC56 605 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 FNIP1Q8TF40 1166 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 CLEC4CQ8WTT0 213 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 RAB6CQ9H0N0 254 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 B4GALT3O60512 393 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 NBNO60934 754 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 SKIP12755 728 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 CCL5P13501 91 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 SELPP16109 830 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 PTPN1P18031 435 aaKnown RBP22.21■■□□□ 1.15
PTPRF-207ENST00000436724 IL1R2P27930 398 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 BCAT1P54687 386 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 DR1Q01658 176 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 SMTNL2Q2TAL5 461 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 OLFML1Q6UWY5 402 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 EXD1Q8NHP7 514 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 C1orf54Q8WWF1 131 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 MTUS1Q9ULD2 1270 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 HPCAL4Q9UM19 191 aa22.21■■□□□ 1.15
PTPRF-207ENST00000436724 PQBP1O60828 265 aaKnown RBP22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms