RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 FBXO16Q8IX29 292 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 PPIL6Q8IXY8 311 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 DDI1Q8WTU0 396 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 MRPS31Q92665 395 aaKnown RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 CNDP1Q96KN2 507 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 EPN3Q9H201 632 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 OSGEPL1Q9H4B0 414 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 SCN3BQ9NY72 215 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 USP15Q9Y4E8 981 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 SHROOM2Q13796 1616 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 DCDC2CA8MYV0 355 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 CYB561D2O14569 222 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 FOXP2O15409 715 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 ANXA9O76027 345 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 KIF2BQ8N4N8 673 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 E2F7Q96AV8 911 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 TADA1Q96BN2 335 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 MTMR12Q9C0I1 747 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 GPRC5CQ9NQ84 441 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 GPATCH2LQ9NWQ4 482 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 RUVBL2Q9Y230 463 aaKnown RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 EFEMP1Q12805 493 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 DYNC1I2Q13409 638 aaKnown RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 MAGED4Q96JG8 741 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 FBXO28Q9NVF7 368 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 CTCFP49711 727 aaPredicted RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 MAP3K7CLP57077 242 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TRIP10Q15642 601 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TTLL9Q3SXZ7 439 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CTXN3Q4LDR2 81 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 LINC00523Q86TU6 105 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 ANKRD49Q8WVL7 239 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 RBBP8Q99708 897 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 ALG6Q9Y672 507 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TMEM120BA0PK00 339 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 MAPK9P45984 424 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CUL2Q13617 745 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 FAM83EQ2M2I3 478 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CCDC60Q8IWA6 550 aaPredicted RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TNIP2Q8NFZ5 429 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 UCMAQ8WVF2 138 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 RIT2Q99578 217 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TFR2Q9UP52 801 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 EIF3LQ9Y262 564 aaKnown RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 RNF103O00237 685 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 RNASEH1O60930 286 aaKnown RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 SUPT7LO94864 414 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CLK1P49759 484 aaKnown RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CMTM5Q96DZ9 223 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 SPACA6W5XKT8 324 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 PDS5AQ29RF7 1337 aaKnown RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 ACADMP11310 421 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 GEMP55040 296 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 NCKAP1LP55160 1127 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 RUSC1Q9BVN2 902 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 EPB41L4AQ9HCS5 686 aaPredicted RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TPST1O60507 370 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 OXCT1P55809 520 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 TRIP4Q15650 581 aaPredicted RBP15.97■□□□□ 0.15
PTPRF-206ENST00000429895 CIPCQ9C0C6 399 aa15.97■□□□□ 0.15
PTPRF-206ENST00000429895 HECW2Q9P2P5 1572 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 CPSF4O95639 269 aaKnown RBP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 ERVK-10P10266 1014 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 RANBP1P43487 201 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 KCNT1Q5JUK3 1230 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 BLOC1S6Q9UL45 172 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 RASSF10A6NK89 507 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 HNRNPRO43390 633 aaKnown RBP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 PPP1R37O75864 691 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 KLHDC7AQ5VTJ3 777 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 USP49Q70CQ1 688 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 PPP1R14AQ96A00 147 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 ALDH8A1Q9H2A2 487 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 RPS6KB2Q9UBS0 482 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 MAGI3Q5TCQ9 1506 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 SGPL1O95470 568 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 HNRNPCP07910 306 aaKnown RBP eCLIP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 MYL4P12829 197 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 CACHD1Q5VU97 1274 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 COPG1Q9Y678 874 aaKnown RBP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 SPATA31E1Q6ZUB1 1445 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 SSU72P8A0A1W2PR75 194 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 TRIM49D1C9J1S8 452 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 URODP06132 367 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 GYS1P13807 737 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 GLRBP48167 497 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 AASDHQ4L235 1098 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-206ENST00000429895 CEP78Q5JTW2 689 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 LRIG3Q6UXM1 1119 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 FGD2Q7Z6J4 655 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 PLEKHH3Q7Z736 793 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 ADGRF2Q8IZF7 708 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 TUBGCP3Q96CW5 907 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 CYP4F12Q9HCS2 524 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 VPS28Q9UK41 221 aa15.96■□□□□ 0.15
PTPRF-206ENST00000429895 VPS26AO75436 327 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 TMEM253P0C7T8 217 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 SLC2A3P11169 496 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 ARHGAP17Q68EM7 881 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF34Q8IZ26 560 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms