RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TASP1Q9H6P5 420 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 EIF3LQ9Y262 564 aaKnown RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 CASZ1Q86V15 1759 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 HUS1O60921 280 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PRLP01236 227 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 KCNMA1Q12791 1236 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 MAD2L1Q13257 205 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 EFR3AQ14156 821 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PDCD4Q53EL6 469 aaKnown RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 UBXN8O00124 270 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 TMEM253P0C7T8 217 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 HIRAP54198 1017 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PEG10Q86TG7 708 aaKnown RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 CD302Q8IX05 232 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 TC2NQ8N9U0 490 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 HDAC7Q8WUI4 952 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 BTN2A2Q8WVV5 523 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 HSPBP1Q9NZL4 362 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 K7ERI5 159 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 SLC15A2Q16348 729 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 STARD8Q92502 1023 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 DDX50Q9BQ39 737 aaKnown RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PXDNLA1KZ92 1463 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 COPZ1P61923 177 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 TMEM270Q6UE05 265 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 CLVS1Q8IUQ0 354 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 CYLDQ9NQC7 956 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 ARAP3Q8WWN8 1544 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 EFCAB6Q5THR3 1501 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SPDYE5A6NIY4 337 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 RPS6P62753 249 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ITGADQ13349 1161 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SPDYE7PQ495Y7 208 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ZFP69Q49AA0 526 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MYDGFQ969H8 173 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ZNF333Q96JL9 665 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 EHD1Q9H4M9 534 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 TUBE1Q9UJT0 475 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 NUMA1Q14980 2115 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 A0A0B4J269 797 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 hCG_1642624A0A1W2PR95 340 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ADAMTS2O95450 1211 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 TUBB3Q13509 450 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 KRT33BQ14525 404 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MMTAG2Q9BU76 263 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MKNK1Q9BUB5 465 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 TSPOAP1O95153 1857 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 TCF4P15884 667 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 QARSP47897 775 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ELF3P78545 371 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 CENPLQ8N0S6 344 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SIX5Q8N196 739 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 PGBD4Q96DM1 585 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SYNJ2BP-COX16A0A087WUM0 186 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 CDH6P55285 790 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 PARP6Q2NL67 630 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 G2E3Q7L622 706 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MYLK2Q9H1R3 596 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MAP3K20Q9NYL2 800 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 COX16Q9P0S2 106 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 PEX1O43933 1283 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SYNCRIPO60506 623 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SOAT2O75908 522 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 LDLRP01130 860 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 DPYSQ14117 519 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 JARID2Q92833 1246 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 EEF2KMTQ96G04 330 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 TSPAN18Q96SJ8 248 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SPATA16Q9BXB7 569 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 GIN1Q9NXP7 522 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 ANKRD6Q9Y2G4 727 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 SNAP23O00161 211 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 NCK2O43639 380 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 RTN3O95197 1032 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 HNMTP50135 292 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 CERKLQ49MI3 558 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 USP39Q53GS9 565 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 RDM1Q8NG50 284 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 GINS2Q9Y248 185 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 CLOCKO15516 846 aa13.35□□□□□ -0.27
COL6A3-206ENST00000409809 PFKFB3Q16875 520 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 MTDHQ86UE4 582 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 PNPT1Q8TCS8 783 aaKnown RBP13.35□□□□□ -0.27
COL6A3-206ENST00000409809 KCNN4O15554 427 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 DYNC1LI2O43237 492 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 TNFRSF21O75509 655 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PSMG1O95456 288 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HIST1H2AGP0C0S8 130 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ALOX12P18054 663 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HIST1H2ADP20671 130 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PTDSS1P48651 473 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 NAA30Q147X3 362 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 C5orf22Q49AR2 442 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 RWDD4Q6NW29 188 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ADHFE1Q8IWW8 467 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HIST1H2AHQ96KK5 128 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HIST1H2AJQ99878 128 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 H2AFJQ9BTM1 129 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 MARCOQ9UEW3 520 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms