RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 NKD2Q969F2 451 aaPredicted RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 ZNF148Q9UQR1 794 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 PIN4Q9Y237 131 aaKnown RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 E5RJQ4 531 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 AKAP5P24588 427 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 VCPP55072 806 aaKnown RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 PKDCCQ504Y2 493 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 IZUMO3Q5VZ72 239 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 IFNL1Q8IU54 200 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 GLIS1Q8NBF1 620 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 UHMK1Q8TAS1 419 aaKnown RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 CCHCR1Q8TD31 782 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 APBA2Q99767 749 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 DDX23Q9BUQ8 820 aaKnown RBP21.16■□□□□ 0.98
USP39-204ENST00000409766 MIS12Q9H081 205 aa21.16■□□□□ 0.98
USP39-204ENST00000409766 RNF8O76064 485 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 KDELR1P24390 212 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 MIPP30301 263 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 HOXC8P31273 242 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 ZNF143P52747 638 aaPredicted RBP21.15■□□□□ 0.98
USP39-204ENST00000409766 GOLGA7BQ2TAP0 167 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 C6orf118Q5T5N4 469 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 HIBCHQ6NVY1 386 aaPredicted RBP21.15■□□□□ 0.98
USP39-204ENST00000409766 ACOT1Q86TX2 421 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 CMASQ8NFW8 434 aaPredicted RBP21.15■□□□□ 0.98
USP39-204ENST00000409766 KATNAL1Q9BW62 490 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 RNF19AQ9NV58 838 aa21.15■□□□□ 0.98
USP39-204ENST00000409766 UBQLN1Q9UMX0 589 aaKnown RBP21.15■□□□□ 0.98
USP39-204ENST00000409766 ITGAVP06756 1048 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 SOWAHAQ2M3V2 549 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 UBXN11Q5T124 520 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 TRNP1Q6NT89 227 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 FAM183BPQ6ZVS7 135 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 SLC35B2Q8TB61 432 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 APOL6Q9BWW8 343 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 ADAM7Q9H2U9 754 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 ASNSD1Q9NWL6 643 aa21.14■□□□□ 0.98
USP39-204ENST00000409766 SMIM28A0A1B0GU29 152 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 TLDC2A0PJX2 215 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 C17orf102A2RUQ5 167 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 C2CD4BA6NLJ0 364 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 PIK3R2O00459 728 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 TTC4O95801 387 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 PCK1P35558 622 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 CRYBB1P53674 252 aaPredicted RBP21.14■□□□□ 0.97
USP39-204ENST00000409766 FSCN1Q16658 493 aaKnown RBP21.14■□□□□ 0.97
USP39-204ENST00000409766 P3H1Q32P28 736 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 XKR4Q5GH76 650 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 UNC93AQ86WB7 457 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 TTC30AQ86WT1 665 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 EPS8L3Q8TE67 593 aaKnown RBP21.14■□□□□ 0.97
USP39-204ENST00000409766 SOCS4Q8WXH5 440 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 HAUS1Q96CS2 278 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 PIWIL1Q96J94 861 aaKnown RBP21.14■□□□□ 0.97
USP39-204ENST00000409766 PWWP2AQ96N64 755 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 EPN3Q9H201 632 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 PCSK1NQ9UHG2 260 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 USP18Q9UMW8 372 aa21.14■□□□□ 0.97
USP39-204ENST00000409766 CENPFP49454 3210 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 PIRO00625 290 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 TRUB2O95900 331 aaKnown RBP21.13■□□□□ 0.97
USP39-204ENST00000409766 CD48P09326 243 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 GPD1P21695 349 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 PURAQ00577 322 aaKnown RBP21.13■□□□□ 0.97
USP39-204ENST00000409766 PTGISQ16647 500 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 OR6B2Q6IFH4 312 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 PMF1Q6P1K2 205 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 BBS12Q6ZW61 710 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 RELL1Q8IUW5 271 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 NME8Q8N427 588 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 CNPY3Q9BT09 278 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 ROPN1BQ9BZX4 212 aaPredicted RBP21.13■□□□□ 0.97
USP39-204ENST00000409766 RNF39Q9H2S5 420 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 RABEP2Q9H5N1 569 aa21.13■□□□□ 0.97
USP39-204ENST00000409766 ROPN1Q9HAT0 212 aaPredicted RBP21.13■□□□□ 0.97
USP39-204ENST00000409766 SRRM3A6NNA2 597 aaPredicted RBP21.12■□□□□ 0.97
USP39-204ENST00000409766 TULP2O00295 520 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 RASGRF2O14827 1237 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 RGS16O15492 202 aaPredicted RBP21.12■□□□□ 0.97
USP39-204ENST00000409766 ACSL3O95573 720 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 CD4P01730 458 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 ZSCAN5DPP0CG00 497 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 KCNE1P15382 129 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 TAF5Q15542 800 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 TNFAIP8L3Q5GJ75 292 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 RGMBQ6NW40 437 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 SAPCD2Q86UD0 394 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 SLC35F5Q8WV83 523 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 SLC4A5Q9BY07 1137 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 FAM49BQ9NUQ9 324 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 DNAJC17Q9NVM6 304 aaKnown RBP21.12■□□□□ 0.97
USP39-204ENST00000409766 KLK14Q9P0G3 267 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 SMIM23A6NLE4 172 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 CST8O60676 142 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 RGS7P49802 495 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 ARSEP51690 589 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 FBXO47Q5MNV8 452 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 SH3PXD2AQ5TCZ1 1133 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 MFSD5Q6N075 450 aa21.12■□□□□ 0.97
USP39-204ENST00000409766 TMEM110Q86TL2 294 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms