RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SLC39A2Q9NP94 309 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 MKS1Q9NXB0 559 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CWC25Q9NXE8 425 aaPredicted RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 SWAP70Q9UH65 585 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 PCDHA7Q9UN72 937 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 PLA2G2DQ9UNK4 145 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 LUC7L2Q9Y383 392 aaKnown RBP5.89□□□□□ -1.47
CLK1-202ENST00000409403 SAR1BQ9Y6B6 198 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 CDH23Q9H251 3354 aa5.89□□□□□ -1.47
CLK1-202ENST00000409403 FRMD3A2A2Y4 597 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 LRRD1A4D1F6 860 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 EME2A4GXA9 379 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 PAPLNO95428 1278 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NR1D1P20393 614 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 SYKP43405 635 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 GPR3P46089 330 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PIP4K2AP48426 406 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 MRPS35P82673 323 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 NHLH1Q02575 133 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PTH1RQ03431 593 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 CEBPZQ03701 1054 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 IFT88Q13099 833 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PDCLQ13371 301 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 TMED1Q13445 227 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 BLMHQ13867 455 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 TBC1D25Q3MII6 688 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 HHATQ5VTY9 493 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 FAM109BQ6ICB4 259 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 MTHFD1LQ6UB35 978 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MPZL3Q6UWV2 235 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NOA1Q8NC60 698 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 LINC00301Q8NCQ3 95 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 B4GALNT2Q8NHY0 566 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NSMCE1Q8WV22 266 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 CCT8L2Q96SF2 557 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 FOXB1Q99853 325 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 DESI2Q9BSY9 194 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 SEMA4AQ9H3S1 761 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 EPHX3Q9H6B9 360 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NOD2Q9HC29 1040 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 LUC7LQ9NQ29 371 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 PAPOLBQ9NRJ5 636 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 ECHDC1Q9NTX5 307 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 UCKL1Q9NWZ5 548 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ZMYND8Q9ULU4 1186 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 PNMA6EA0A0J9YXQ4 647 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 FAM237AA0A1B0GTK4 181 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 A0A1B0GVL5 298 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ZNF839A8K0R7 811 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PRC1O43663 620 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MFAP3LO75121 409 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 H2AFYO75367 372 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 SURF6O75683 361 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 FLOT1O75955 427 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ABLIM3O94929 683 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PRLP01236 227 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 RPSAP08865 295 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 ENO2P09104 434 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 PDHBP11177 359 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NCAM1P13591 858 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ENPP1P22413 925 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 FBLN1P23142 703 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MC4RP32245 332 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MDH1P40925 334 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 VAV2P52735 878 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 RBM5P52756 815 aaKnown RBP eCLIP5.88□□□□□ -1.47
CLK1-202ENST00000409403 MANFP55145 182 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 ALDH6A1Q02252 535 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 CACNB2Q08289 660 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 MOGSQ13724 837 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 E2F5Q15329 346 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 LRRC41Q15345 812 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PCBP2Q15366 365 aaKnown RBP eCLIP5.88□□□□□ -1.47
CLK1-202ENST00000409403 ZRSR2Q15696 482 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 FSCN1Q16658 493 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 CMPK2Q5EBM0 449 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 PAPD7Q5XG87 772 aaKnown RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 VASNQ6EMK4 673 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 CD300LDQ6UXZ3 194 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ZNF572Q7Z3I7 529 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 LMNTD2Q8IXW0 634 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 CHPFQ8IZ52 775 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 GALNT15Q8N3T1 639 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MMGT1Q8N4V1 131 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MREGQ8N565 214 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 TGFBRAP1Q8WUH2 860 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ATRIPQ8WXE1 791 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 RAPGEF4Q8WZA2 1011 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 IP6K1Q92551 441 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 FAM168AQ92567 244 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 DPF2Q92785 391 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 MAML3Q96JK9 1138 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 NEK1Q96PY6 1258 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 RTFDC1Q9BY42 306 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 TSGA10Q9BZW7 698 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 RNF38Q9H0F5 515 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 HSD3B7Q9H2F3 369 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 CCM2LQ9NUG4 571 aaPredicted RBP5.88□□□□□ -1.47
CLK1-202ENST00000409403 CTNNAL1Q9UBT7 734 aa5.88□□□□□ -1.47
CLK1-202ENST00000409403 ZNF180Q9UJW8 692 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms