RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SULT6B1Q6IMI4 303 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 KLHDC10Q6PID8 442 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CPLX2Q6PUV4 134 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 MFSD6Q6ZSS7 791 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ZNF483Q8TF39 744 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 NEU4Q8WWR8 484 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CFHR4Q92496 578 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 GFM2Q969S9 779 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 NSUN4Q96CB9 384 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 CHFRQ96EP1 664 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SLC35A4Q96G79 324 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 C16orf92Q96LL3 132 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 GPATCH1Q9BRR8 931 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 PAIP1Q9H074 479 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 PRDM12Q9H4Q4 367 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 C11orf21Q9P2W6 132 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 SAE1Q9UBE0 346 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 DPP7Q9UHL4 492 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ZHX1Q9UKY1 873 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 ARHGAP26Q9UNA1 814 aa4.58□□□□□ -1.68
HMGB1-204ENST00000399489 REXO2Q9Y3B8 237 aaKnown RBP4.58□□□□□ -1.68
HMGB1-204ENST00000399489 RSF1Q96T23 1441 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 A0A1W2PRX2 142 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 CPLX1O14810 134 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 NARSO43776 548 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 PTP4A3O75365 173 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 FAM155BO75949 473 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 A1BGP04217 495 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 C1SP09871 688 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 PORP16435 677 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 CHMP24386 653 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 KIF5BP33176 963 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 WASP42768 502 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 STAT5BP51692 787 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 RNASE9P60153 205 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ARF3P61204 181 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 PSMC1P62191 440 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 TMF1P82094 1093 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ARF1P84077 181 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 DGCR2P98153 550 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 MALLQ13021 153 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 RASA2Q15283 850 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 EPHA7Q15375 998 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ASIC2Q16515 512 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ZBTB41Q5SVQ8 909 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 IL17DQ8TAD2 202 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 CYP2W1Q8TAV3 490 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 STYXQ8WUJ0 223 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ST8SIA4Q92187 359 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 RABGGTAQ92696 567 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 KAT5Q92993 513 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 ATP2A3Q93084 1043 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 MTFMTQ96DP5 389 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 TMEM176AQ96HP8 235 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 NCAPGQ9BPX3 1015 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 KCTD10Q9H3F6 313 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 TSPY26PQ9H489 355 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 TRPV4Q9HBA0 871 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 SAYSD1Q9NPB0 183 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 DIAPH3Q9NSV4 1193 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 STK32BQ9NY57 414 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 EPS15L1Q9UBC2 864 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 CPNE7Q9UBL6 633 aa4.57□□□□□ -1.68
HMGB1-204ENST00000399489 XPO7Q9UIA9 1087 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 CFAP20Q9Y6A4 193 aaKnown RBP4.57□□□□□ -1.68
HMGB1-204ENST00000399489 GOLGA6L22H0YM25 854 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 RTCAO00442 366 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 HNRNPDLO14979 420 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SLC16A6O15403 523 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 ITGA5P08648 1049 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 CLTBP09497 229 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 KITP10721 976 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 NOGQ13253 232 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 IL10RAQ13651 578 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 RIN1Q13671 783 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 UBE3CQ15386 1083 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SEC23AQ15436 765 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 PTPN14Q15678 1187 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SMN1Q16637 294 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 THEMIS2Q5TEJ8 643 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 ANKRD45Q5TZF3 282 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 ISM2Q6H9L7 571 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SDCCAG8Q86SQ7 713 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 TTC30AQ86WT1 665 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 OTUD6BQ8N6M0 293 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 OTUD7AQ8TE49 926 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 CACTINQ8WUQ7 758 aaKnown RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 NRG4Q8WWG1 115 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 THAP4Q8WY91 577 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 RUBCNQ92622 972 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 DLG3Q92796 817 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 GCDHQ92947 438 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SLC7A6OSQ96CW6 309 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SPATA17Q96L03 361 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 ACE2Q9BYF1 805 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-204ENST00000399489 KRTAP4-4Q9BYR3 166 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 POFUT1Q9H488 388 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 SPON1Q9HCB6 807 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 PDRG1Q9NUG6 133 aa4.56□□□□□ -1.68
HMGB1-204ENST00000399489 IGSF9Q9P2J2 1179 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms