RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SLC16A4O15374 487 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CYTH3O43739 400 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 CST8O60676 142 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 RNASEH1O60930 286 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 LDHAP00338 332 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PPARGP37231 505 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 RPL10AP62906 217 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 BST1Q10588 318 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DMP1Q13316 513 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FAXCQ5TGI0 409 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TTC39BQ5VTQ0 682 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 ZCCHC9Q8N567 271 aaKnown RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TTC13Q8NBP0 860 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 ZBED2Q9BTP6 218 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 KLC2Q9H0B6 622 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 BRD8Q9H0E9 1235 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 LRRC19Q9H756 370 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 SPATA7Q9P0W8 599 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 IP6K2Q9UHH9 426 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TLK1Q9UKI8 766 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DNALI1O14645 258 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 ZBTB5O15062 677 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DEAF1O75398 565 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FOSP01100 380 aaPredicted RBP9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FDFT1P37268 417 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 INHBEP58166 350 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 EVX2Q03828 476 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 NR1D2Q14995 579 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 RGS21Q2M5E4 152 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TMEM63BQ5T3F8 832 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 DCAF12L1Q5VU92 463 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 FBXL13Q8NEE6 735 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 YIPF2Q9BWQ6 316 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 TEKT3Q9BXF9 490 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 OCEL1Q9H607 264 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 KCNK4Q9NYG8 393 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 PKD2L2Q9NZM6 624 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 SLC7A8Q9UHI5 535 aa9.7□□□□□ -0.86
COL28A1-201ENST00000399429 LMTK2Q8IWU2 1503 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 SYCE1LA8MT33 242 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CFAP99D6REC4 459 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 UFL1O94874 794 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CSPG5O95196 566 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PENKP01210 267 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 GNA15P30679 374 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PDPK2PQ6A1A2 396 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 TPTE2Q6XPS3 522 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 ZBTB49Q6ZSB9 765 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 HPS6Q86YV9 775 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 KAT5Q92993 513 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 DNAJC19Q96DA6 116 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CDRT15Q96T59 188 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 NOL6Q9H6R4 1146 aaKnown RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 AGPAT3Q9NRZ7 376 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 KRT82Q9NSB4 513 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 MATN2O00339 956 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CYP11B1P15538 503 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 RAP1GDS1P52306 607 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 STX1BP61266 288 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 FASTKD3Q14CZ7 662 aaKnown RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 EFTUD2Q15029 972 aaKnown RBP eCLIP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 NPY5RQ15761 445 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PPP6R3Q5H9R7 873 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 C6orf52Q5T4I8 152 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 ACAD10Q6JQN1 1059 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 BNC2Q6ZN30 1099 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CSRNP1Q96S65 589 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 RIOK1Q9BRS2 568 aaKnown RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 SEPT3Q9UH03 358 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CLEC11AQ9Y240 323 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 SNX5Q9Y5X3 404 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 MYH7BA7E2Y1 1941 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 MYH6P13533 1939 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 ZNF804BA4D1E1 1349 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 H0YIN7 160 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 GNGT2O14610 69 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 MGEA5O60502 916 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 RBP3P10745 1247 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 SLC5A3P53794 718 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 MTA1Q13330 715 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PDK1Q15118 436 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PADI6Q6TGC4 694 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 POLNQ7Z5Q5 900 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 SLFN11Q7Z7L1 901 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 CDR2LQ86X02 465 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 DHX38Q92620 1227 aaKnown RBP9.69□□□□□ -0.86
COL28A1-201ENST00000399429 COX4I2Q96KJ9 171 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 PLA2G12BQ9BX93 195 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 COQ6Q9Y2Z9 468 aa9.69□□□□□ -0.86
COL28A1-201ENST00000399429 A0A0J9YVX5 310 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 TTLL13PA6NNM8 815 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 H3BSA7 217 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 COQ9O75208 318 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 CCDC159P0C7I6 412 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GZMAP12544 262 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 KCNA4P22459 653 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 TEDDM1Q5T9Z0 273 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 EGFLAMQ63HQ2 1017 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 IFNEQ86WN2 208 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 CPXCR1Q8N123 301 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms