RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 SUSD4Q5VX71 490 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 METTL2BQ6P1Q9 378 aaKnown RBP6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 CNNM4Q6P4Q7 775 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 TMEM154Q6P9G4 183 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 STRA8Q7Z7C7 330 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 FAM124AQ86V42 546 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 SLC22A9Q8IVM8 553 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 SULF1Q8IWU6 871 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 C12orf56Q8IXR9 622 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 SLC9A6Q92581 669 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 P2RX5Q93086 422 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 CALML4Q96GE6 196 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 CCDC138Q96M89 665 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 NYXQ9GZU5 481 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 IFT22Q9H7X7 185 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 WASH6PQ9NQA3 447 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 INTS10Q9NVR2 710 aaKnown RBP6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 NOVA2Q9UNW9 492 aaKnown RBP6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 NIP7Q9Y221 180 aaKnown RBP eCLIP6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 PCDHB3Q9Y5E6 796 aa6.9□□□□□ -1.31
TM9SF4-202ENST00000398022 MUC3AQ02505 3323 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 C1orf232A0A0U1RR37 186 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 SPOPO43791 374 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 HSF2BPO75031 334 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 GBP1P32455 592 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 SOX11P35716 441 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 TAF12Q16514 161 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ARL13BQ3SXY8 428 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 TMEM259Q4ZIN3 620 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 TBC1D9BQ66K14 1250 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 RANBP10Q6VN20 620 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 FAM186BQ8IYM0 893 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 WDR60Q8WVS4 1066 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ATL1Q8WXF7 558 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 BSNDQ8WZ55 320 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CNOT6LQ96LI5 555 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 IFIH1Q9BYX4 1025 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ZCWPW1Q9H0M4 648 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 UCK1Q9HA47 277 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 NEK6Q9HC98 313 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CCDC87Q9NVE4 849 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 IL37Q9NZH6 218 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 TRIM10Q9UDY6 481 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 DCTN4Q9UJW0 460 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 KCNH4Q9UQ05 1017 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 COL6A3P12111 3177 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 TFRCP02786 760 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 PORP16435 677 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 HERVK_113P62684 666 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 RNASELQ05823 741 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 SMARCB1Q12824 385 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 DOC2AQ14183 400 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 NR1D2Q14995 579 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CCNI2Q6ZMN8 369 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 STX12Q86Y82 276 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 KIRREL3Q8IZU9 778 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ANKRD35Q8N283 1001 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 UBR7Q8N806 425 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 HSPH1Q92598 858 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 C11orf24Q96F05 449 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 PCMTD2Q9NV79 361 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 REXO2Q9Y3B8 237 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 HYOU1Q9Y4L1 999 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 MYH2Q9UKX2 1941 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 A0A1W2PQ67 120 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 NOTOA8MTQ0 251 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 RNF225M0QZC1 329 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 THAP12O43422 761 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CYP2A6P11509 494 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 HOXA7P31268 230 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 GGCXP38435 758 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ATN1P54259 1190 aaPredicted RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 DYNLL1P63167 89 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 FSTL1Q12841 308 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 FIGNQ5HY92 759 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 C16orf86Q6ZW13 317 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 ZNF507Q8TCN5 953 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CALML6Q8TD86 181 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 CCT6BQ92526 530 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 PIGSQ96S52 555 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 C9orf16Q9BUW7 83 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 SHCBP1LQ9BZQ2 653 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 MRM3Q9HC36 420 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 VCX3AQ9NNX9 186 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 MRPL40Q9NQ50 206 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 FAM32AQ9Y421 112 aaKnown RBP6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 AP1M2Q9Y6Q5 423 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 DOCK2Q92608 1830 aa6.89□□□□□ -1.31
TM9SF4-202ENST00000398022 A0A1W2PQJ5 194 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 CCDC78A2IDD5 438 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 LRRIQ4A6NIV6 560 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 GOLGA8RI6L899 631 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 SRGAP2O75044 1071 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 ALOX12P18054 663 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 CTNNA2P26232 953 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 CRKLP46109 303 aaKnown RBP6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 GYG1P46976 350 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 NPY5RQ15761 445 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 NFIL3Q16649 462 aa6.88□□□□□ -1.31
TM9SF4-202ENST00000398022 MDH1BQ5I0G3 518 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms