RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 E2F7Q96AV8 911 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 RBM12Q9NTZ6 932 aaKnown RBP5.67□□□□□ -1.5
VPS13C-204ENST00000395898 DUX4Q9UBX2 424 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 TRMT6Q9UJA5 497 aaKnown RBP5.67□□□□□ -1.5
VPS13C-204ENST00000395898 MAP3K13O43283 966 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 CTCFP49711 727 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-204ENST00000395898 CDH18Q13634 790 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 PLEKHM3Q6ZWE6 761 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 P3H2Q8IVL5 708 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 WNK4Q96J92 1243 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 RBBP8Q99708 897 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 SLC25A13Q9UJS0 675 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 FHOD1Q9Y613 1164 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 WDR47O94967 919 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 LSM8O95777 96 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PYGMP11217 842 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 GZMAP12544 262 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TGM2P21980 687 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 GCLCP48506 637 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 MRPL28Q13084 256 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CAPRIN2Q6IMN6 1127 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SH3GL1Q99961 368 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 UBE2OQ9C0C9 1292 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 AGLP35573 1532 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 M0QYT0 321 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 NKRFO15226 690 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 COILP38432 576 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CAP2P40123 477 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ITGA8P53708 1063 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZNF177Q13360 481 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 Q4G0T1 1027 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 FIGNQ5HY92 759 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 C17orf80Q9BSJ5 609 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PABPC3Q9H361 631 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TUBGCP4Q9UGJ1 667 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 USP18Q9UMW8 372 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SLCO1B7G3V0H7 640 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TM9SF1O15321 606 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 GRAP2O75791 330 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 UPP2O95045 317 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 THP07101 528 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CYP11B2P19099 503 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TRPC1P48995 793 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TROAPQ12815 778 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 DEPDC1Q5TB30 811 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 VIRMAQ69YN4 1812 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZDHHC17Q8IUH5 632 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SNX31Q8N9S9 440 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 IPMKQ8NFU5 416 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZFP42Q96MM3 310 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CHMP2BQ9UQN3 213 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZBTB12Q9Y330 459 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 RAD54BQ9Y620 910 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SNTNA6NMZ2 147 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 GLRA3O75311 464 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CTSHP09668 335 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 MAPTP10636 758 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 IRF1P10914 325 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PSMA4P25789 261 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 KPNB1Q14974 876 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PCNX4Q63HM2 1172 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ADCK1Q86TW2 530 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 UBA3Q8TBC4 463 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CNPY3Q9BT09 278 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 YIPF2Q9BWQ6 316 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 MYH3P11055 1940 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 A0A0A6YYK5 440 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SRP72O76094 671 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CACHD1Q5VU97 1274 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TRIM69Q86WT6 500 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 UCMAQ8WVF2 138 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TARS2Q9BW92 718 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 FAM49BQ9NUQ9 324 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 MAGEB16A2A368 324 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 F5H5T6 163 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 DYRK3O43781 588 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 NTSR2O95665 410 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CRTAMO95727 393 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PGK2P07205 417 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 HMBSP08397 361 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SUPT20HL2P0C7V6 817 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 COPAP53621 1224 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 DEFA1P59665 94 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 DEFA3P59666 94 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 COL23A1Q86Y22 540 aaPredicted RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 PCSK9Q8NBP7 692 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 TMEM39BQ9GZU3 492 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ZNF229Q9UJW7 825 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 SOX13Q9UN79 622 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CARSP49589 748 aaKnown RBP5.66□□□□□ -1.5
VPS13C-204ENST00000395898 KYNUQ16719 465 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 WLSQ5T9L3 541 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 ARMC6Q6NXE6 501 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 MMGT1Q8N4V1 131 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 GMCL1P1Q8NEA9 526 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 BTN2A2Q8WVV5 523 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 CYGBQ8WWM9 190 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 NSL1Q96IY1 281 aa5.66□□□□□ -1.5
VPS13C-204ENST00000395898 KRT84Q9NSB2 600 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms