RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 UXTQ9UBK9 157 aaPredicted RBP23.08■■□□□ 1.28
CLN3-207ENST00000395653 KCNJ18B7U540 433 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 F8VP50 259 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 CCDC130P13994 396 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 GJA1P17302 382 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 EEF1GP26641 437 aaKnown RBP23.07■■□□□ 1.28
CLN3-207ENST00000395653 CACNA2D1P54289 1103 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 MTMR3Q13615 1198 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 KCNJ12Q14500 433 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 TEAD2Q15562 447 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 POTEHQ6S545 545 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 MTSS1LQ765P7 747 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 UBR7Q8N806 425 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 C12orf29Q8N999 325 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 SLC2A14Q8TDB8 520 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 GCNAQ96QF7 691 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 INTS2Q9H0H0 1204 aaKnown RBP23.07■■□□□ 1.28
CLN3-207ENST00000395653 ATXN3LQ9H3M9 355 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 GCNT4Q9P109 453 aa23.07■■□□□ 1.28
CLN3-207ENST00000395653 GTPBP10A4D1E9 387 aaKnown RBP23.06■■□□□ 1.28
CLN3-207ENST00000395653 LETM1O95202 739 aaPredicted RBP23.06■■□□□ 1.28
CLN3-207ENST00000395653 GCNT1Q02742 428 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 ZNF394Q53GI3 561 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 HSP90AA4PQ58FG1 418 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 DENND5BQ6ZUT9 1274 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 PPM1KQ8N3J5 372 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 STKLD1Q8NE28 680 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 FGF14Q92915 247 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 CYFIP2Q96F07 1278 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 HNRNPABQ99729 332 aaKnown RBP23.06■■□□□ 1.28
CLN3-207ENST00000395653 TUBGCP2Q9BSJ2 902 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 EPHX3Q9H6B9 360 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 DMAP1Q9NPF5 467 aaPredicted RBP23.06■■□□□ 1.28
CLN3-207ENST00000395653 FAM49BQ9NUQ9 324 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 TMEM30AQ9NV96 361 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 EHD2Q9NZN4 543 aa23.06■■□□□ 1.28
CLN3-207ENST00000395653 MAGED2Q9UNF1 606 aaPredicted RBP23.06■■□□□ 1.28
CLN3-207ENST00000395653 F11P03951 625 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 PRKCSHP14314 528 aaPredicted RBP23.05■■□□□ 1.28
CLN3-207ENST00000395653 RAD23BP54727 409 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 MYL5Q02045 173 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 TDGQ13569 410 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 VWA3BQ502W6 1294 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 ARHGAP15Q53QZ3 475 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 TCP11X2Q5H9J9 407 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 CDKAL1Q5VV42 579 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 PARM1Q6UWI2 310 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 SLC4A11Q8NBS3 891 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 TMEM176AQ96HP8 235 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 NDST4Q9H3R1 872 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 KRT82Q9NSB4 513 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 NUMBLQ9Y6R0 609 aa23.05■■□□□ 1.28
CLN3-207ENST00000395653 AP1G2O75843 785 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 ZXDAP98168 799 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 SKOR2Q2VWA4 1001 aaPredicted RBP23.04■■□□□ 1.28
CLN3-207ENST00000395653 GBP6Q6ZN66 633 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 TMEM150AQ86TG1 271 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 UBALD2Q8IYN6 164 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 RSAD2Q8WXG1 361 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 EDAQ92838 391 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 ASB16Q96NS5 453 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 NAT10Q9H0A0 1025 aaKnown RBP23.04■■□□□ 1.28
CLN3-207ENST00000395653 CSNK1G1Q9HCP0 422 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 ZMYM5Q9UJ78 669 aa23.04■■□□□ 1.28
CLN3-207ENST00000395653 EXOC3L4Q17RC7 722 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 FAM78AQ5JUQ0 283 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 MIIPQ5JXC2 388 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 TRIM65Q6PJ69 517 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 ARHGEF19Q8IW93 802 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 SLC44A3Q8N4M1 653 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 SMARCD2Q92925 531 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 HEXIM2Q96MH2 286 aaKnown RBP23.03■■□□□ 1.28
CLN3-207ENST00000395653 ZSWIM3Q96MP5 696 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 KCNK16Q96T55 309 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 CRACR2AQ9BSW2 395 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 TTLL2Q9BWV7 592 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 SLITRK6Q9H5Y7 841 aa23.03■■□□□ 1.28
CLN3-207ENST00000395653 SOBPA7XYQ1 873 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 ECI2O75521 394 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 FAM200BP0CF97 657 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 ACO1P21399 889 aaKnown RBP23.02■■□□□ 1.28
CLN3-207ENST00000395653 ADORA2BP29275 332 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 ANO6Q4KMQ2 910 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 STXBP5Q5T5C0 1151 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 GPR158Q5T848 1215 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 PHLDB3Q6NSJ2 640 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 RRAGAQ7L523 313 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 ZSCAN18Q8TBC5 510 aaPredicted RBP23.02■■□□□ 1.28
CLN3-207ENST00000395653 KAT5Q92993 513 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 JAKMIP2Q96AA8 810 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 FAM81BQ96LP2 452 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 TASP1Q9H6P5 420 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 TRPV4Q9HBA0 871 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 FANCLQ9NW38 375 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 DUSP12Q9UNI6 340 aa23.02■■□□□ 1.28
CLN3-207ENST00000395653 TADA3O75528 432 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 SLC9A1P19634 815 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 FCARP24071 287 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 DDX6P26196 483 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-207ENST00000395653 USP46P62068 366 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms