RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 UBE4BO95155 1302 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 C2orf78A6NCI8 922 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 K7ESF4 209 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 DDX6P26196 483 aaKnown RBP eCLIP17.74■□□□□ 0.43
PTPRK-208ENST00000392449 USP46P62068 366 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 RUNX3Q13761 415 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 SPATA18Q8TC71 538 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 TRMT2BQ96GJ1 504 aaKnown RBP17.74■□□□□ 0.43
PTPRK-208ENST00000392449 MYRFLQ96LU7 910 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 FNBP1Q96RU3 617 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 IER2Q9BTL4 223 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 FAM126AQ9BYI3 521 aaPredicted RBP17.74■□□□□ 0.43
PTPRK-208ENST00000392449 DPEP3Q9H4B8 488 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 MAGEF1Q9HAY2 307 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 POLR3BQ9NW08 1133 aaPredicted RBP17.74■□□□□ 0.43
PTPRK-208ENST00000392449 CDH9Q9ULB4 789 aa17.74■□□□□ 0.43
PTPRK-208ENST00000392449 ACTN4O43707 911 aaKnown RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 KLRC4O43908 158 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 WARSP23381 471 aaKnown RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 CACNA2D1P54289 1103 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 MYL6P60660 151 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 BMT2Q1RMZ1 405 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 MDH1BQ5I0G3 518 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 FSTL4Q6MZW2 842 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 C1orf228Q6PIY5 440 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 DPH6Q7L8W6 267 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 HS2ST1Q7LGA3 356 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 ARL14EPQ8N8R7 260 aaPredicted RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 PCED1BQ96HM7 432 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 FUBP3Q96I24 572 aaKnown RBP eCLIP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 FBRSL1Q9HCM7 1045 aaKnown RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 TMEM30AQ9NV96 361 aa17.73■□□□□ 0.43
PTPRK-208ENST00000392449 MAGEC2Q9UBF1 373 aaPredicted RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 UXTQ9UBK9 157 aaPredicted RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 HELZP42694 1942 aaKnown RBP17.73■□□□□ 0.43
PTPRK-208ENST00000392449 CKMP06732 381 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 GRIK1P39086 918 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 MAGEA11P43364 429 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 STK4Q13043 487 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 PPP2R5DQ14738 602 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 WDR72Q3MJ13 1102 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 DGKKQ5KSL6 1271 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 C4orf50Q6ZRC1 276 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 PRR23BQ6ZRT6 265 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 KIAA0895Q8NCT3 520 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 KIF9Q9HAQ2 790 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 PARD6AQ9NPB6 346 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 NXF1Q9UBU9 619 aaKnown RBP17.72■□□□□ 0.43
PTPRK-208ENST00000392449 RCOR1Q9UKL0 485 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 WNT6Q9Y6F9 365 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 CACNA1AO00555 2505 aa17.72■□□□□ 0.43
PTPRK-208ENST00000392449 A0A1B0GVL5 298 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 PVALEFA0A1B0GWK0 134 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 HRO43593 1189 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 GNL1P36915 607 aaPredicted RBP17.71■□□□□ 0.43
PTPRK-208ENST00000392449 PXNP49023 591 aaPredicted RBP17.71■□□□□ 0.43
PTPRK-208ENST00000392449 NRLP54845 237 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 MTF1Q14872 753 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 ZNF77Q15935 545 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 KNOP1Q1ED39 458 aaKnown RBP17.71■□□□□ 0.43
PTPRK-208ENST00000392449 CC2D1AQ6P1N0 951 aaPredicted RBP17.71■□□□□ 0.43
PTPRK-208ENST00000392449 CEP57L1Q8IYX8 460 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 OR6B3Q8NGW1 331 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 PAGE5Q96GU1 130 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 XYLT2Q9H1B5 865 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 SNX25Q9H3E2 840 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 GCNT4Q9P109 453 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 ZMYM5Q9UJ78 669 aa17.71■□□□□ 0.43
PTPRK-208ENST00000392449 TRAV19A0A0A6YYK7 116 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 F8VP50 259 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 CLDN5O00501 218 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 EXOC3O60645 756 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 EGFP01133 1207 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 SLFN14P0C7P3 912 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 TGM1P22735 817 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 RAP1GAPP47736 663 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 TNNC1P63316 161 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 ZXDBP98169 803 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 FAM160A1Q05DH4 1040 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 USP4Q13107 963 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 ZNF268Q14587 947 aaPredicted RBP17.7■□□□□ 0.42
PTPRK-208ENST00000392449 RSPO4Q2I0M5 234 aaPredicted RBP17.7■□□□□ 0.42
PTPRK-208ENST00000392449 KMT5BQ4FZB7 885 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 TMEM196Q5HYL7 178 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 TDRD10Q5VZ19 366 aaKnown RBP17.7■□□□□ 0.42
PTPRK-208ENST00000392449 MYCBPAPQ8TBZ2 947 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 ZNF518BQ9C0D4 1074 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 SMYD3Q9H7B4 428 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 CFAP45Q9UL16 551 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 ZDHHC9Q9Y397 364 aa17.7■□□□□ 0.42
PTPRK-208ENST00000392449 SCAMP3O14828 347 aaKnown RBP17.69■□□□□ 0.42
PTPRK-208ENST00000392449 USP17L7P0C7H9 530 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 PFKFB1P16118 471 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 CDH8P55286 799 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 TRPC3Q13507 836 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 VSTM1Q6UX27 236 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SCARA5Q6ZMJ2 495 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 ERMP1Q7Z2K6 904 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 C12orf56Q8IXR9 622 aa17.69■□□□□ 0.42
PTPRK-208ENST00000392449 SH3RF2Q8TEC5 729 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms