RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ACAD10Q6JQN1 1059 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 MAATS1Q7Z4T9 603 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 KLHL7Q8IXQ5 586 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 TOP6BLQ8N6T0 577 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 C12orf29Q8N999 325 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 ATP6V1G3Q96LB4 118 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 EPN3Q9H201 632 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 FAM124BQ9H5Z6 455 aaPredicted RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 KANSL3Q9P2N6 904 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 PCDHGC5Q9Y5F6 944 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 TIMM13Q9Y5L4 95 aaPredicted RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 F8W810 466 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 ATMINO43313 823 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 MED7O43513 233 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 CYP1A1P04798 512 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 TMEM253P0C7T8 217 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 RFC2P35250 354 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 NSFP46459 744 aaKnown RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 BRCC3P46736 316 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 TRADDQ15628 312 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 TIGD5Q53EQ6 642 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 SGO2Q562F6 1265 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 TRIM72Q6ZMU5 477 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 MICALCLQ6ZW33 695 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 ARHGEF26Q96DR7 871 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 UROC1Q96N76 676 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 DPEP3Q9H4B8 488 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 DNAJB4Q9UDY4 337 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 CHORDC1Q9UHD1 332 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 CAPN7Q9Y6W3 813 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 FNDC1Q4ZHG4 1894 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 ALPK3Q96L96 1907 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 ATXN2Q99700 1313 aaKnown RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 HMGB1P1B2RPK0 211 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 RAD51CO43502 376 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 ITGB1P05556 798 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 VDRP11473 427 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 HNRNPH1P31943 449 aaKnown RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 OR1G1P47890 313 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 NOMO3P69849 1222 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 CENPCQ03188 943 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 FAM43BQ6ZT52 329 aaPredicted RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 UBE2Q1Q7Z7E8 422 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 UNC93AQ86WB7 457 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 NPAS4Q8IUM7 802 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 CRIPAKQ8N1N5 446 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 C1orf131Q8NDD1 294 aaKnown RBP13.12□□□□□ -0.31
CIITA-202ENST00000381835 CASD1Q96PB1 797 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 LPIN3Q9BQK8 851 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 FAM49BQ9NUQ9 324 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 PLAAQ9Y263 795 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 CEP83Q9Y592 693 aa13.12□□□□□ -0.31
CIITA-202ENST00000381835 GOLGA6L10A6NI86 522 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 TBKBP1A7MCY6 615 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 H0YHG0 523 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 KIF4AO95239 1232 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 ACRP10323 421 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 GPC5P78333 572 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 DSC1Q08554 894 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 HLTFQ14527 1009 aaKnown RBP eCLIP13.11□□□□□ -0.31
CIITA-202ENST00000381835 CEP85LQ5SZL2 805 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 EMC10Q5UCC4 262 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 SMYD5Q6GMV2 418 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 MFSD5Q6N075 450 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 DENND1BQ6P3S1 775 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 DCLRE1AQ6PJP8 1040 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 LIMS2Q7Z4I7 341 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 OSTM1Q86WC4 334 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 COLGALT2Q8IYK4 626 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 TMEM199Q8N511 208 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 SLC35G2Q8TBE7 412 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 ZNF653Q96CK0 615 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 OSGEPQ9NPF4 335 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 HCSTQ9UBK5 93 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 PCDHGC3Q9UN70 934 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 STXBP5LQ9Y2K9 1186 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 PRG3Q9Y2Y8 225 aaPredicted RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 ATP8B3O60423 1300 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 KCNK3O14649 394 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 HOXA2O43364 376 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 WARSP23381 471 aaKnown RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 ACAT1P24752 427 aaKnown RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 MDH1P40925 334 aaKnown RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 CDR1P51861 262 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 RPS6KA1Q15418 735 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 PPP1R26Q5T8A7 1209 aaPredicted RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 CD300LGQ6UXG3 332 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 PHLDB2Q86SQ0 1253 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 MCOLN2Q8IZK6 566 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 TMEM35BQ8NCS4 154 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 ZNF473Q8WTR7 871 aaKnown RBP13.11□□□□□ -0.31
CIITA-202ENST00000381835 RFFLQ8WZ73 363 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 C11orf70Q9BRQ4 267 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 CENPHQ9H3R5 247 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 YY1AP1Q9H869 796 aa13.11□□□□□ -0.31
CIITA-202ENST00000381835 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.11□□□□□ -0.31
CIITA-202ENST00000381835 BTNL10A8MVZ5 291 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 M0QYV0 167 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 O00370 1275 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 MICAL2O94851 1124 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms