RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CCNL1Q9UK58 526 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 OFD1O75665 1012 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 JTBO76095 146 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 KITP10721 976 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 NPR1P16066 1061 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 SFPQP23246 707 aaKnown RBP eCLIP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 KELP23276 732 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 AKAP5P24588 427 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 FPR3P25089 353 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 CTGFP29279 349 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ARHGAP25P42331 645 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 MCL1Q07820 350 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 SLC10A2Q12908 348 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 MYO1EQ12965 1108 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 TTF1Q15361 905 aaPredicted RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PLEKHG6Q3KR16 790 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PNLDC1Q8NA58 520 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 RAPGEF4Q8WZA2 1011 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ACO2Q99798 780 aaKnown RBP2.8□□□□□ -1.96
VPS13A-206ENST00000376646 KLHL42Q9P2K6 505 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 ANKRD6Q9Y2G4 727 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PLEKHM1Q9Y4G2 1056 aa2.8□□□□□ -1.96
VPS13A-206ENST00000376646 PRRT4C9JH25 899 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ERC2O15083 957 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TLR5O60602 858 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 HTR1BP28222 390 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 RAB27AP51159 221 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 AARS2Q5JTZ9 985 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 FCRL6Q6DN72 434 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SLC18B1Q6NT16 456 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 RAVER1Q8IY67 606 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 DNAJC5GQ8N7S2 189 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 JPH3Q8WXH2 748 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 LENG8Q96PV6 779 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 NELL2Q99435 816 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ZMAT3Q9HA38 289 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TCF7L1Q9HCS4 588 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ANLNQ9NQW6 1124 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 GABBR1Q9UBS5 961 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 LPAR3Q9UBY5 353 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 G3BP2Q9UN86 482 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ADAMTS5Q9UNA0 930 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TMX2Q9Y320 296 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SNX14Q9Y5W7 946 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 AP4M1O00189 453 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 AKAP10O43572 662 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 EXOC3O60645 756 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 UBXN7O94888 489 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 PPIFP30405 207 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TUBA4AP68366 448 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SSBP2P81877 361 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 KRT17Q04695 432 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 CTBP1Q13363 440 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 E2F2Q14209 437 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 PTCHD3Q3KNS1 767 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 AMOTQ4VCS5 1084 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SLC44A4Q53GD3 710 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 L1TD1Q5T7N2 865 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TEDDM1Q5T9Z0 273 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SFRP4Q6FHJ7 346 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ANKRD16Q6P6B7 361 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 Q6ZWC4 215 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 NEK8Q86SG6 692 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 MPP5Q8N3R9 675 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ZBTB34Q8NCN2 500 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 TBC1D5Q92609 795 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 MTFMTQ96DP5 389 aaKnown RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 C5orf34Q96MH7 638 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 SPRTNQ9H040 489 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.79□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF180Q9UJW8 692 aa2.79□□□□□ -1.96
VPS13A-206ENST00000376646 CACNA1IQ9P0X4 2223 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 KCNU1A8MYU2 1149 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 S100BP04271 92 aaPredicted RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 VIPR2P41587 438 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 ALDH5A1P51649 535 aaPredicted RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 PIN1Q13526 163 aaPredicted RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 CYP1B1Q16678 543 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 KIRREL2Q6UWL6 708 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 B3GNT9Q6UX72 402 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 DENND1CQ8IV53 801 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 CNGA4Q8IV77 575 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 SLC15A3Q8IY34 581 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF366Q8N895 744 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 C1GALT1C1Q96EU7 318 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 RITA1Q96K30 269 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 NUP88Q99567 741 aaPredicted RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 FSD1LQ9BXM9 530 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 METTL14Q9HCE5 456 aaKnown RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 TYW1Q9NV66 732 aaKnown RBP2.78□□□□□ -1.96
VPS13A-206ENST00000376646 KLHL13Q9P2N7 655 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 MED16Q9Y2X0 877 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF804BA4D1E1 1349 aa2.78□□□□□ -1.96
VPS13A-206ENST00000376646 A0A088AWK7 358 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 MYO1CO00159 1063 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 PPP6CO00743 305 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 NPSP0C0P6 89 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 GPSM2P81274 684 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 E2F1Q01094 437 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 FGL2Q14314 439 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms