RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 C11orf91Q3C1V1 193 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PPP1R15BQ5SWA1 713 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 LRRC74BQ6ZQY2 392 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 UNC45BQ8IWX7 931 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 SCG3Q8WXD2 468 aaKnown RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 RSAD2Q8WXG1 361 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 PIDD1Q9HB75 910 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 TAS2R1Q9NYW7 299 aa17.17■□□□□ 0.34
SDC4-201ENST00000372733 XPO7Q9UIA9 1087 aaKnown RBP17.17■□□□□ 0.34
SDC4-201ENST00000372733 E5RJQ4 531 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 H0YIN7 160 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 NDC80O14777 642 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 NPTXRO95502 500 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 CD48P09326 243 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 DLDP09622 509 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 RXRBP28702 533 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 BASP1P80723 227 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 BAATQ14032 418 aaPredicted RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 PIGHQ14442 188 aaPredicted RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 LBRQ14739 615 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 PPP1R2P3Q6NXS1 205 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 UBR7Q8N806 425 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 TEKT4Q8WW24 435 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 ALKBH8Q96BT7 664 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 TSC22D3Q99576 134 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 TJP2Q9UDY2 1190 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 FBXO40Q9UH90 709 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 LRCH1Q9Y2L9 728 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 STYXL1Q9Y6J8 313 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 DOCK5Q9H7D0 1870 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 CNTNAP2Q9UHC6 1331 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 FCHO1O14526 889 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 SMIM24O75264 130 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 MYL2P10916 166 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 ESRRAP11474 423 aaPredicted RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 KCNA2P16389 499 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 PSMA2P25787 234 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 ETV4P43268 484 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 NEK3P51956 506 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 FAAP100Q0VG06 881 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 PRKD1Q15139 912 aaPredicted RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 ZC3H12AQ5D1E8 599 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 IRGCQ6NXR0 463 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 RFX8Q6ZV50 586 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 ALYREFQ86V81 257 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 ZC3H18Q86VM9 953 aaKnown RBP17.16■□□□□ 0.34
SDC4-201ENST00000372733 WDTC1Q8N5D0 677 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 FAM71DQ8N9W8 422 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 APOPT1Q96IL0 206 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 WNK4Q96J92 1243 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 WASF2Q9Y6W5 498 aa17.16■□□□□ 0.34
SDC4-201ENST00000372733 DNAJC6O75061 913 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 ITGBL1O95965 494 aaPredicted RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 CST3P01034 146 aaPredicted RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 FESP07332 822 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 DHRS4L1P0CG22 281 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 PYGBP11216 843 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 GNAT1P11488 350 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 RFC1P35251 1148 aaPredicted RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 SLC25A11Q02978 314 aaKnown RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 CIAPIN1Q6FI81 312 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 CCDC62Q6P9F0 684 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 RSBN1LQ6PCB5 846 aaPredicted RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 SCARA5Q6ZMJ2 495 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 PDIK1LQ8N165 341 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 ARFGAP1Q8N6T3 406 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 TMEM35BQ8NCS4 154 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 JOSD2Q8TAC2 188 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 TFAP2BQ92481 460 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 NMUR2Q9GZQ4 415 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 ARHGEF4Q9NR80 690 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 MTO1Q9Y2Z2 717 aaKnown RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 FAM237BA0A1B0GVD1 139 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 PSAPP07602 524 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 NR3C2P08235 984 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 ELK3P41970 407 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 ERFP50548 548 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 SLC34A1Q06495 639 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 KBTBD12Q3ZCT8 623 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 PHC3Q8NDX5 983 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 STMN2Q93045 179 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 IMPG2Q9BZV3 1241 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 PHACTR1Q9C0D0 580 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 RIPK3Q9Y572 518 aa17.15■□□□□ 0.34
SDC4-201ENST00000372733 CTDP1Q9Y5B0 961 aaPredicted RBP17.15■□□□□ 0.34
SDC4-201ENST00000372733 TCRBV9S1A1TA0A576 114 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 KBTBD13C9JR72 458 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 H0YCG3 227 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 AHCYL1O43865 530 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 TBC1D12O60347 775 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 LRCH4O75427 683 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 RGS20O76081 388 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 LSM8O95777 96 aaKnown RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 AMPD1P23109 780 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 CALRP27797 417 aaKnown RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 CCND2P30279 289 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 OCRLQ01968 901 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 RNF220Q5VTB9 566 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 BBS12Q6ZW61 710 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 VSIG10LQ86VR7 867 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms