RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PFKLP17858 780 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 CYP2F1P24903 491 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 RDXP35241 583 aaKnown RBP14.87□□□□□ -0.03
VPS29-201ENST00000360579 UBA7P41226 1012 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 MRPS21P82921 87 aaKnown RBP14.87□□□□□ -0.03
VPS29-201ENST00000360579 POSTNQ15063 836 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 CRY1Q16526 586 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 CFAP221Q4G0U5 840 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 HSF5Q4G112 596 aaPredicted RBP14.87□□□□□ -0.03
VPS29-201ENST00000360579 C2orf27AQ580R0 203 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 TRIM61Q5EBN2 209 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 INTS6LQ5JSJ4 861 aaKnown RBP14.87□□□□□ -0.03
VPS29-201ENST00000360579 SPDYCQ5MJ68 293 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 SDHAF4Q5VUM1 108 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 PDCL2Q8N4E4 241 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 KIAA1958Q8N8K9 716 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 DEFB124Q8NES8 71 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 MDGA1Q8NFP4 955 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 SH3RF2Q8TEC5 729 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 FUBP3Q96I24 572 aaKnown RBP eCLIP14.87□□□□□ -0.03
VPS29-201ENST00000360579 CYP2S1Q96SQ9 504 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 ST6GALNAC4Q9H4F1 302 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 ZHX3Q9H4I2 956 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 DDX43Q9NXZ2 648 aaKnown RBP14.87□□□□□ -0.03
VPS29-201ENST00000360579 GCNT4Q9P109 453 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 ARHGAP26Q9UNA1 814 aa14.87□□□□□ -0.03
VPS29-201ENST00000360579 ANKRD63C9JTQ0 380 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 H0Y626 953 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 K7EQS6 105 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 TRIM16O95361 564 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 TOP3BO95985 862 aaKnown RBP14.86□□□□□ -0.03
VPS29-201ENST00000360579 HDCP19113 662 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 BCKDHBP21953 392 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 PCSK1P29120 753 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 SEC13P55735 322 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 BYSLQ13895 437 aaKnown RBP14.86□□□□□ -0.03
VPS29-201ENST00000360579 DHX8Q14562 1220 aaKnown RBP14.86□□□□□ -0.03
VPS29-201ENST00000360579 MCTP1Q6DN14 999 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 SPATA2LQ8IUW3 424 aaPredicted RBP14.86□□□□□ -0.03
VPS29-201ENST00000360579 SYT12Q8IV01 421 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 ARL14EPQ8N8R7 260 aaPredicted RBP14.86□□□□□ -0.03
VPS29-201ENST00000360579 STKLD1Q8NE28 680 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 OLIG1Q8TAK6 271 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 WHAMMQ8TF30 809 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 POMGNT1Q8WZA1 660 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 SLC39A7Q92504 469 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 CEP295NLQ96MC4 621 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 SLC22A12Q96S37 553 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 L1RE1Q9UN81 338 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 MSRB2Q9Y3D2 182 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 ATG2BQ96BY7 2078 aa14.86□□□□□ -0.03
VPS29-201ENST00000360579 AKAP13Q12802 2813 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 DSPP15924 2871 aaKnown RBP14.85□□□□□ -0.03
VPS29-201ENST00000360579 FASNP49327 2511 aaKnown RBP14.85□□□□□ -0.03
VPS29-201ENST00000360579 MYMKA6NI61 221 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 UPK3BL1B0FP48 263 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 UPK3BL2E5RIL1 263 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 HOXB3P14651 431 aaPredicted RBP14.85□□□□□ -0.03
VPS29-201ENST00000360579 HOXD12P35452 270 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 OPRD1P41143 372 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 LHX1P48742 406 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 LRSAM1Q6UWE0 723 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 C4orf50Q6ZRC1 276 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 TTC30AQ86WT1 665 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 LRRC52Q8N7C0 313 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 RASSF8Q8NHQ8 419 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 CACTINQ8WUQ7 758 aaKnown RBP14.85□□□□□ -0.03
VPS29-201ENST00000360579 HVCN1Q96D96 273 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 FIZ1Q96SL8 496 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 PKMYT1Q99640 499 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 LINC00597Q9H2U6 94 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 POLMQ9NP87 494 aaPredicted RBP14.85□□□□□ -0.03
VPS29-201ENST00000360579 EHD2Q9NZN4 543 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 GTF3C4Q9UKN8 822 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 DENND4CQ5VZ89 1909 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 SCN1AP35498 2009 aa14.85□□□□□ -0.03
VPS29-201ENST00000360579 DMXL2Q8TDJ6 3036 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 LAMA5O15230 3695 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 ZNF638Q14966 1978 aaKnown RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 POLR2BP30876 1174 aaKnown RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 EIF2DP41214 584 aaKnown RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 P2RY2P41231 377 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 MAGEA11P43364 429 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 MAPK8P45983 427 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 ATXN3P54252 364 aaPredicted RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 TFAMQ00059 246 aaKnown RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 EOGTQ5NDL2 527 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 KIAA1211LQ6NV74 962 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 SLC23A3Q6PIS1 610 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 CRELD2Q6UXH1 353 aaPredicted RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 SCN4BQ8IWT1 228 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 CCDC33Q8N5R6 958 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 TOP6BLQ8N6T0 577 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 RAD54LQ92698 747 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 GDAP2Q9NXN4 497 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 ITGA11Q9UKX5 1188 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 CIZ1Q9ULV3 898 aaPredicted RBP14.84□□□□□ -0.03
VPS29-201ENST00000360579 LHX6Q9UPM6 363 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 AGAP1Q9UPQ3 857 aa14.84□□□□□ -0.03
VPS29-201ENST00000360579 NUP205Q92621 2012 aa14.83□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms