RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ZNF569Q5MCW4 686 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 CYP4A22Q5TCH4 519 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 LIN9Q5TKA1 542 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 PRSS55Q6UWB4 352 aaPredicted RBP21.02■□□□□ 0.96
CLN3-205ENST00000359984 DDX53Q86TM3 631 aaKnown RBP21.02■□□□□ 0.96
CLN3-205ENST00000359984 RHOT2Q8IXI1 618 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 DCP1BQ8IZD4 617 aaKnown RBP21.02■□□□□ 0.96
CLN3-205ENST00000359984 STK32AQ8WU08 396 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 RNPC3Q96LT9 517 aaKnown RBP21.02■□□□□ 0.96
CLN3-205ENST00000359984 CAPN6Q9Y6Q1 641 aa21.02■□□□□ 0.96
CLN3-205ENST00000359984 BEST1O76090 585 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 ERBB2P04626 1255 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 FAM200BP0CF97 657 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 NPR3P17342 541 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 SLC39A12Q504Y0 691 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 RSPO2Q6UXX9 243 aaPredicted RBP21.01■□□□□ 0.95
CLN3-205ENST00000359984 RIN2Q8WYP3 895 aaPredicted RBP21.01■□□□□ 0.95
CLN3-205ENST00000359984 C18orf8Q96DM3 657 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 WDR24Q96S15 920 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 SLC4A5Q9BY07 1137 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 RHOBTB2Q9BYZ6 727 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 ST7Q9NRC1 585 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 KRT82Q9NSB4 513 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 CTTNBP2NLQ9P2B4 639 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 AP1G2O75843 785 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 GABBR2O75899 941 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 GABRB2P47870 512 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 SYT10Q6XYQ8 523 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 CLEC20AQ6ZU45 233 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 MSANTD4Q8NCY6 345 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 PIK3R5Q8WYR1 880 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 SMOQ99835 787 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 HERC2P3Q9BVR0 1158 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 NUP85Q9BW27 656 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 SYNCQ9H7C4 482 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 TMEM30AQ9NV96 361 aa21.01■□□□□ 0.95
CLN3-205ENST00000359984 KIAA1671Q9BY89 1806 aa21■□□□□ 0.95
CLN3-205ENST00000359984 XPO1O14980 1071 aaKnown RBP21■□□□□ 0.95
CLN3-205ENST00000359984 BDNFP23560 247 aa21■□□□□ 0.95
CLN3-205ENST00000359984 CACNA2D1P54289 1103 aa21■□□□□ 0.95
CLN3-205ENST00000359984 SLC8A3P57103 927 aa21■□□□□ 0.95
CLN3-205ENST00000359984 FAM109BQ6ICB4 259 aaPredicted RBP21■□□□□ 0.95
CLN3-205ENST00000359984 PLEKHA7Q6IQ23 1121 aa21■□□□□ 0.95
CLN3-205ENST00000359984 KIAA1841Q6NSI8 718 aa21■□□□□ 0.95
CLN3-205ENST00000359984 SLC35F6Q8N357 371 aa21■□□□□ 0.95
CLN3-205ENST00000359984 TPCN2Q8NHX9 752 aa21■□□□□ 0.95
CLN3-205ENST00000359984 SMARCD1Q96GM5 515 aa21■□□□□ 0.95
CLN3-205ENST00000359984 OXCT2Q9BYC2 517 aaPredicted RBP21■□□□□ 0.95
CLN3-205ENST00000359984 UVRAGQ9P2Y5 699 aa21■□□□□ 0.95
CLN3-205ENST00000359984 TCRBV5S1A1TA0A578 114 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 GRXCR1A8MXD5 290 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 E5RJQ4 531 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 KIF2AO00139 706 aaPredicted RBP20.99■□□□□ 0.95
CLN3-205ENST00000359984 PIK3R2O00459 728 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 FGF18O76093 207 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 PLA2G4AP47712 749 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 MAP3K7CLP57077 242 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 MAMLD1Q13495 774 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 C4orf50Q6ZRC1 276 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 TMEM110Q86TL2 294 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 XYLT1Q86Y38 959 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 MTRRQ9UBK8 725 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 STRIP2Q9ULQ0 834 aa20.99■□□□□ 0.95
CLN3-205ENST00000359984 LAMA2P24043 3122 aaKnown RBP20.99■□□□□ 0.95
CLN3-205ENST00000359984 GRID2IPA4D2P6 1211 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 FANCGO15287 622 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 MTA2O94776 668 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 TUBB4AP04350 444 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 RPL34P49207 117 aaKnown RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 HADHBP55084 474 aaKnown RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 ARPP19P56211 112 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 DSG1Q02413 1049 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 KRT17Q04695 432 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 ZNF268Q14587 947 aaPredicted RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 PSMD5Q16401 504 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 IFI16Q16666 785 aaKnown RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 DNTTIP2Q5QJE6 756 aaKnown RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 PIGZQ86VD9 579 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 SPATA2LQ8IUW3 424 aaPredicted RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 VPS52Q8N1B4 723 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 KLHL23Q8NBE8 558 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 ZMIZ2Q8NF64 920 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 ZNF564Q8TBZ8 553 aaPredicted RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 IPO4Q8TEX9 1081 aaKnown RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 HSFY1Q96LI6 401 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 KCNK16Q96T55 309 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 PARVAQ9NVD7 372 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 DNAI1Q9UI46 699 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 PCDHGC5Q9Y5F6 944 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 BACE2Q9Y5Z0 518 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 CEP290O15078 2479 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 C2CD2LO14523 706 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 PALMO75781 387 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 CAPN15O75808 1086 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 GJB6O95452 261 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 MYOGP15173 224 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 GLUD2P49448 558 aa20.98■□□□□ 0.95
CLN3-205ENST00000359984 GSCP56915 257 aaPredicted RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 NFE2Q16621 373 aaPredicted RBP20.98■□□□□ 0.95
CLN3-205ENST00000359984 TRIM58Q8NG06 486 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms