RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 ZNF786Q8N393 782 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 ATP6V0D2Q8N8Y2 350 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 ALG6Q9Y672 507 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 DDX39BQ13838 428 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 EFL1Q7Z2Z2 1120 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 PNKPQ96T60 521 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 CXorf56Q9H5V9 222 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 SEPT3Q9UH03 358 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 TBX3O15119 743 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 RPS7P62081 194 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 CNTN1Q12860 1018 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 NOTUMQ6P988 496 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 LINC00523Q86TU6 105 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 CCDC103Q8IW40 242 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 KCNB2Q92953 911 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 FAM111AQ96PZ2 611 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 LRRIQ3A6PVS8 624 aaPredicted RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 COPAP53621 1224 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 FAM83EQ2M2I3 478 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 PDLIM2Q96JY6 352 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 ISCUQ9H1K1 167 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 PAIP2BQ9ULR5 123 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 IGSF9BQ9UPX0 1349 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 TRIM49D1C9J1S8 452 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 TPST1O60507 370 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 ALDH1A2O94788 518 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 TFE3P19532 575 aaPredicted RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 KLHDC7AQ5VTJ3 777 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 CACHD1Q5VU97 1274 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 SLC25A13Q9UJS0 675 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 SETD1BQ9UPS6 1966 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 A0A1W2PQJ5 194 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 GOLGA8TH3BQL2 631 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 ODC1P11926 461 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 TGM2P21980 687 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 SERPINB1P30740 379 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 KAT2BQ92831 832 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 KRCC1Q9NPI7 259 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 PDHBP11177 359 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 PSMA4P25789 261 aaKnown RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 DSG1Q02413 1049 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 GLRA4Q5JXX5 417 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 GJC2Q5T442 439 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 C16orf86Q6ZW13 317 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 KRT78Q8N1N4 520 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 RIBC1Q8N443 379 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 VMP1Q96GC9 406 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 TSC22D4Q9Y3Q8 395 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 TCF7P36402 384 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 SLC29A2Q14542 456 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 STRIP1Q5VSL9 837 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 ERP44Q9BS26 406 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 THAP2Q9H0W7 228 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 STRNO43815 780 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 DARSP14868 501 aaKnown RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 ZNF677Q86XU0 584 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 CARNMT1Q8N4J0 409 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 IMPAD1Q9NX62 359 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 CCT8L1PA6NM43 557 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 RBP3P10745 1247 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 CYP51A1Q16850 503 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 CCDC157Q569K6 752 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 FAM136AQ96C01 138 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 MTERF3Q96E29 417 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 VPS33BQ9H267 617 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 STMN3Q9NZ72 180 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 GLI2P10070 1586 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 C2orf81A6NN90 581 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 MAP3K6O95382 1288 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 EPHB2P29323 1055 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 SEC24CP53992 1094 aa19.06■□□□□ 0.64
SHANK1-202ENST00000359082 ZNF177Q13360 481 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 SETD3Q86TU7 594 aaPredicted RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 GEMIN8Q9NWZ8 242 aaKnown RBP19.06■□□□□ 0.64
SHANK1-202ENST00000359082 TAF6P49848 677 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 DNAJC3Q13217 504 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 ACAD10Q6JQN1 1059 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 ERAP1Q9NZ08 941 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.05■□□□□ 0.64
SHANK1-202ENST00000359082 PDS5AQ29RF7 1337 aaKnown RBP19.05■□□□□ 0.64
SHANK1-202ENST00000359082 STX7O15400 261 aaKnown RBP19.05■□□□□ 0.64
SHANK1-202ENST00000359082 PCNAP12004 261 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 CPT1AP50416 773 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 SH3GL2Q99962 352 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 MTIF3Q9H2K0 278 aaKnown RBP19.05■□□□□ 0.64
SHANK1-202ENST00000359082 MAN1C1Q9NR34 630 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 HACL1Q9UJ83 578 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 CROCC2H7BZ55 1655 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 C17orf102A2RUQ5 167 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 SLC26A4O43511 780 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 FDFT1P37268 417 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 SLC40A1Q9NP59 571 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 IARS2Q9NSE4 1012 aaKnown RBP19.05■□□□□ 0.64
SHANK1-202ENST00000359082 ALKQ9UM73 1620 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 PSMD14O00487 310 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 ANXA9O76027 345 aa19.05■□□□□ 0.64
SHANK1-202ENST00000359082 SGPL1O95470 568 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms