RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SEMA4DQ92854 862 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 NMD3Q96D46 503 aaKnown RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 ZNHIT6Q9NWK9 470 aaKnown RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 APEX2Q9UBZ4 518 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 AJAP1Q9UKB5 411 aaPredicted RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 SLC12A4Q9UP95 1085 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 LRRC53A6NM62 1247 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 AKR1B10O60218 316 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 IL18RAPO95256 599 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 STAG3L1P0CL83 205 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 DLATP10515 647 aaKnown RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 CCL5P13501 91 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 GRM5P41594 1212 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 KRT83P78385 493 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 IFI35P80217 286 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 PHLDB3Q6NSJ2 640 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 NOTUMQ6P988 496 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 TMEM192Q8IY95 271 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 CYP4X1Q8N118 509 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ANKRD42Q8N9B4 389 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 FBXL13Q8NEE6 735 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 FNBP1Q96RU3 617 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 CRISPLD2Q9H0B8 497 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 CARD9Q9H257 536 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ZWILCHQ9H900 591 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 FAM114A2Q9NRY5 505 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF180Q9UJW8 692 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF510Q9Y2H8 683 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 RALGAPA2Q2PPJ7 1873 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 KBTBD13C9JR72 458 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 BOLA2-SMG1P6H3BVE0 249 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ARVCFO00192 962 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ZC3H11AO75152 810 aaKnown RBP eCLIP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 HARSP12081 509 aaKnown RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 GJA8P48165 433 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 CCDC6Q16204 474 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 TDRD10Q5VZ19 366 aaKnown RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 RRAGAQ7L523 313 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 NANOGNBQ7Z5D8 188 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 THNSL1Q8IYQ7 743 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 DNAJC9Q8WXX5 260 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 GPR88Q9GZN0 384 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 TRMT13Q9NUP7 481 aaKnown RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 RAB20Q9NX57 234 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 UBAP1Q9NZ09 502 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 SCOCQ9UIL1 159 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 NOC2LQ9Y3T9 749 aaKnown RBP10.64□□□□□ -0.71
SYNE1-203ENST00000354674 ASB3Q9Y575 518 aa10.64□□□□□ -0.71
SYNE1-203ENST00000354674 M0QZ92 97 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 LRRN2O75325 713 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 VNN1O95497 513 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ALOX15P16050 662 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 GM2AP17900 193 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 PTDSS1P48651 473 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 MRPS35P82673 323 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 TMEM132AQ24JP5 1023 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 UBXN11Q5T124 520 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 UBAP2Q5T6F2 1119 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 HGSNATQ68CP4 663 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 CACNA2D4Q7Z3S7 1137 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 APBB1IPQ7Z5R6 666 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 CTU1Q7Z7A3 348 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 RNF168Q8IYW5 571 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 TAS1R2Q8TE23 839 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ADPGKQ9BRR6 497 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 STK33Q9BYT3 514 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 STARD7Q9NQZ5 370 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 SPATA7Q9P0W8 599 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 SLC4A7Q9Y6M7 1214 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 SQORQ9Y6N5 450 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 DAPK3O43293 454 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 CYLC1P35663 651 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 TRAF7Q6Q0C0 670 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 OR5B17Q8NGF7 314 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 VTI1AQ96AJ9 217 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF333Q96JL9 665 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 DDX47Q9H0S4 455 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ASB7Q9H672 318 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 RPF1Q9H9Y2 349 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 GINS2Q9Y248 185 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 MROH7Q68CQ1 1323 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 TNNI1P19237 187 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 MNX1P50219 401 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 PEX5P50542 639 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 SLC10A6Q3KNW5 377 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 GJB7Q6PEY0 223 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 FBXO46Q6PJ61 603 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ALKAL1Q6UXT8 129 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 ARMC5Q96C12 935 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 DEFB118Q96PH6 123 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 EIF2AQ9BY44 585 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 VCXQ9H320 206 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 PLEKHA5Q9HAU0 1116 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 INTS9Q9NV88 658 aaKnown RBP10.63□□□□□ -0.71
SYNE1-203ENST00000354674 GGA2Q9UJY4 613 aa10.63□□□□□ -0.71
SYNE1-203ENST00000354674 CCDC160A6NGH7 325 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CEP104O60308 925 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 NPTXRO95502 500 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CXCL8P10145 99 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms