RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FKBP9P1Q75LS8 142 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ZFP42Q96MM3 310 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 BTBD9Q96Q07 612 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 PLK2Q9NYY3 685 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 PRIM2P49643 509 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 CHI3L2Q15782 390 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 EAPPQ56P03 285 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 KRT77Q7Z794 578 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 SNX9Q9Y5X1 595 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 CCDC154A6NI56 674 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 FTLP02792 175 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 MYL12AP19105 171 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ME2P23368 584 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 RTKN2Q8IZC4 609 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 PCDHGA3Q9Y5H0 932 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 PDK3Q15120 406 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 SCARA3Q6AZY7 606 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 KLHL32Q96NJ5 620 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 VAV1P15498 845 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 GTF2H1P32780 548 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ATP2C1P98194 919 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 ADHFE1Q8IWW8 467 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 SH3KBP1Q96B97 665 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 TMCC3Q9ULS5 477 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 SYNCRIPO60506 623 aaKnown RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 C8orf59Q8N0T1 100 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 DHRSXQ8N5I4 330 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 STARD8Q92502 1023 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 CCSER1Q9C0I3 900 aa13.06□□□□□ -0.32
COL6A3-203ENST00000353578 XPO7Q9UIA9 1087 aaKnown RBP13.06□□□□□ -0.32
COL6A3-203ENST00000353578 HAT1O14929 419 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MDM4O15151 490 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MYL6P60660 151 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 PLA2R1Q13018 1463 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ALOX12P18054 663 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MAD2L1Q13257 205 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 THEMIS2Q5TEJ8 643 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 C3orf62Q6ZUJ4 267 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 KSR1Q8IVT5 923 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ANKRD13AQ8IZ07 590 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MKNK1Q9BUB5 465 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 OSBPL6Q9BZF3 934 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 SHOX2O60902 331 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 CYP21A2P08686 494 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MTHFSDQ2M296 383 aaKnown RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MYLPFQ96A32 169 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 SP100P23497 879 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 DYNC1LI2O43237 492 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 STARP49675 285 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 AGAP9Q5VTM2 703 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 RASSF6Q6ZTQ3 369 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 EIF3MQ7L2H7 374 aaKnown RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ZBTB8BQ8NAP8 495 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 TRPV1Q8NER1 839 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 CCSER2Q9H7U1 834 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 EPB41L4AQ9HCS5 686 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 TELO2Q9Y4R8 837 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 CEP152O94986 1710 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 RAG1P15918 1043 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 PDIA5Q14554 519 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 EFHC2Q5JST6 749 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ZNF662Q6ZS27 426 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 CINPQ9BW66 212 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ANKARQ7Z5J8 1434 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 PEX1O43933 1283 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 MOSPD2Q8NHP6 518 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 FOPNLQ96NB1 174 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 SEC31BQ9NQW1 1179 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 FADS3Q9Y5Q0 445 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 H3BMM5 538 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 CSE1LP55060 971 aaKnown RBP13.05□□□□□ -0.32
COL6A3-203ENST00000353578 ABCB5Q2M3G0 1257 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 FBXO11Q86XK2 927 aa13.05□□□□□ -0.32
COL6A3-203ENST00000353578 GOLGA8SH3BPF8 625 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 DRAP1Q14919 205 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 DHFR2Q86XF0 187 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 LRRC20Q8TCA0 184 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RAD54LQ92698 747 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 OSBPL10Q9BXB5 764 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 SPEF1Q9Y4P9 236 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 AFF2P51816 1311 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ITSN1Q15811 1721 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RNMTO43148 476 aaKnown RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 IST1P53990 364 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RAB43Q86YS6 212 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 FICDQ9BVA6 458 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 TMEM120AQ9BXJ8 343 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 GYPCP04921 128 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 TRAF2Q12933 501 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 TNFAIP1Q13829 316 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ANKZF1Q9H8Y5 726 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 DNAJB4Q9UDY4 337 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 GPN3Q9UHW5 284 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 FKBP9O95302 570 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RFX8Q6ZV50 586 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PEG10Q86TG7 708 aaKnown RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PCDH18Q9HCL0 1135 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 TCF7L2Q9NQB0 619 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RGS18Q9NS28 235 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms