RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CPT1BQ92523 772 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 ACSF2Q96CM8 615 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 NT5C1BQ96P26 610 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 C11orf70Q9BRQ4 267 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 AMNQ9BXJ7 453 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 KLHL4Q9C0H6 718 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 C20orf27Q9GZN8 174 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 UNC45AQ9H3U1 944 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 MARCOQ9UEW3 520 aaPredicted RBP7.11□□□□□ -1.27
VPS39-202ENST00000348544 COQ4Q9Y3A0 265 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 PPME1Q9Y570 386 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 SNCAIPQ9Y6H5 919 aa7.11□□□□□ -1.27
VPS39-202ENST00000348544 XIRP1Q702N8 1843 aaKnown RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 SPDYE16A6NNV3 312 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 KLF11O14901 512 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 MAGEB3O15480 346 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TMEM63AO94886 807 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 FOSP01100 380 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 C6orf222P0C671 652 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 PCSK6P29122 969 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PHBP35232 272 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PRELPP51888 382 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GDF10P55107 478 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PLOD1Q02809 727 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 PTK7Q13308 1070 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 KLHL38Q2WGJ6 581 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 MMEL1Q495T6 779 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 NADK2Q4G0N4 442 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TMEM259Q4ZIN3 620 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 RALGPS1Q5JS13 557 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 EFHC1Q5JVL4 640 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 KRT39Q6A163 491 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TXNRD3NBQ6F5E7 133 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 B3GNT6Q6ZMB0 384 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TMC7Q7Z402 723 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 USP6NLQ92738 828 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 FAM81BQ96LP2 452 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 NACC1Q96RE7 527 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 EBF4Q9BQW3 602 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 LXNQ9BS40 222 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SMYD3Q9H7B4 428 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PCDH9Q9HC56 1237 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 UBAP1Q9NZ09 502 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 KCND2Q9NZV8 630 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ZNF232Q9UNY5 417 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ZNF536O15090 1300 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 CCDC195A0A1B0GUA6 201 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ARHGEF35A5YM69 484 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 BTBD19C9JJ37 291 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 E7ESA3 106 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SGK1O00141 431 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ATP2A1O14983 1001 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PDE5AO76074 875 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 KITP10721 976 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GALK1P51570 392 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 AQP5P55064 265 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 MCCD1P59942 119 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 UBXN2AP68543 259 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GPSM2P81274 684 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SULT2A1Q06520 285 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ZNF252P-AS1Q0IIN9 211 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TLR1Q15399 786 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SNRNP35Q16560 246 aaKnown RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 TEX44Q53QW1 395 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SH2D4BQ5SQS7 431 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SLFN13Q68D06 897 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 CIAPIN1Q6FI81 312 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PADI6Q6TGC4 694 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 FBXO11Q86XK2 927 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 PASD1Q8IV76 773 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 NAT8LQ8N9F0 302 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 SLC26A7Q8TE54 656 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GAB3Q8WWW8 586 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 C7orf26Q96N11 449 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ACAP3Q96P50 834 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 ACCSQ96QU6 501 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 SRPK1Q96SB4 655 aaKnown RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 C1orf21Q9H246 121 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 TMEM206Q9H813 350 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 GINM1Q9NU53 330 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 RAB20Q9NX57 234 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 DRG1Q9Y295 367 aaKnown RBP7.1□□□□□ -1.27
VPS39-202ENST00000348544 NRAPQ86VF7 1730 aa7.1□□□□□ -1.27
VPS39-202ENST00000348544 H3BNX3 289 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TXNDC9O14530 226 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CYB561D2O14569 222 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 CCNT2O60583 730 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 GAS7O60861 476 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 FAM155BO75949 473 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 KRT1P04264 644 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 ITGAVP06756 1048 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 IL1R1P14778 569 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 NSFP46459 744 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 FOLH1Q04609 750 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 SFSWAPQ12872 951 aaKnown RBP7.09□□□□□ -1.27
VPS39-202ENST00000348544 SNAPC2Q13487 334 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 HIC1Q14526 733 aa7.09□□□□□ -1.27
VPS39-202ENST00000348544 TRIP10Q15642 601 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms