RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 APOL6Q9BWW8 343 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 UBA6A0AVT1 1052 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 DGAT1O75907 488 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 PECAM1P16284 738 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 RNF135Q8IUD6 432 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 ADSSL1Q8N142 457 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 NSUN6Q8TEA1 469 aaKnown RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 TRIM51Q9BSJ1 452 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 SLC38A7Q9NVC3 462 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 IL12AP29459 219 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 ADORA1P30542 326 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 SARSP49591 514 aaKnown RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 POU4F1Q01851 419 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 SCARA5Q6ZMJ2 495 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 TPCN2Q8NHX9 752 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 OSBP2Q969R2 916 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 DMAP1Q9NPF5 467 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 AKAP7Q9P0M2 348 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 PCSK2P16519 638 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 HOXB8P17481 243 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 DNAJB2P25686 324 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 CACNA2D1P54289 1103 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 GALCP54803 685 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 NFIAQ12857 509 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 CAMKK2Q96RR4 588 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 PAGR1Q9BTK6 254 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 ZNF518BQ9C0D4 1074 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 THAP1Q9NVV9 213 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 ATP6V1HQ9UI12 483 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 SHOC2Q9UQ13 582 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 ACAT1P24752 427 aaKnown RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 MYL6P60660 151 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 OASLQ15646 514 aaKnown RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 PID1Q7Z2X4 250 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 GLYCTKQ8IVS8 523 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 DYRK4Q9NR20 520 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 IARS2Q9NSE4 1012 aaKnown RBP13.79□□□□□ -0.2
COL6A3-202ENST00000347401 IQGAP1P46940 1657 aa13.79□□□□□ -0.2
COL6A3-202ENST00000347401 WEE2P0C1S8 567 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 MLH1P40692 756 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 CRKP46108 304 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 HIST2H2ACQ16777 129 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 HIST2H2AA3Q6FI13 130 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 C11orf63Q6NUN7 778 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 DNAJC7Q99615 494 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 CD4P01730 458 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 PRIM2P49643 509 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 LRRC24Q50LG9 513 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TC2NQ8N9U0 490 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 IL17REQ8NFR9 667 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 RMDN3Q96TC7 470 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 LXNQ9BS40 222 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 CRNNQ9UBG3 495 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 HEG1Q9ULI3 1381 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 INO80Q9ULG1 1556 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 USP27XA6NNY8 438 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TAF4O00268 1085 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 GMFBP60983 142 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 C2CD6Q53TS8 623 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 BTN2A1Q7KYR7 527 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TFB1MQ8WVM0 346 aaKnown RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 PCDHA6Q9UN73 950 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 PCDHA8Q9Y5H6 950 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TRIM49BA6NDI0 452 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 MYL12AP19105 171 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 METTL16Q86W50 562 aaKnown RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 SH3BP4Q9P0V3 963 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 PPP2R1BP30154 601 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 NDUFAF6Q330K2 333 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 USP17L2Q6R6M4 530 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 BTBD10Q9BSF8 475 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 RPAP3Q9H6T3 665 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 GTF3C4Q9UKN8 822 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 CORO1CQ9ULV4 474 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 PKP3Q9Y446 797 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 SPACA6W5XKT8 324 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 SDR42E2A6NKP2 422 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TMEM114B3SHH9 223 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 GYPCP04921 128 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 TTLL4Q14679 1199 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 CATSPER4Q7RTX7 472 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 ARID3BQ8IVW6 561 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-202ENST00000347401 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 NEMP1O14524 444 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 NR2C2P49116 596 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 SLC27A3Q5K4L6 730 aa13.78□□□□□ -0.2
COL6A3-202ENST00000347401 MAGEB2O15479 319 aa13.77□□□□□ -0.2
COL6A3-202ENST00000347401 ZNF211Q13398 564 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-202ENST00000347401 THEMIS2Q5TEJ8 643 aa13.77□□□□□ -0.2
COL6A3-202ENST00000347401 MRNIPQ6NTE8 343 aa13.77□□□□□ -0.2
COL6A3-202ENST00000347401 CENPLQ8N0S6 344 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-202ENST00000347401 MPP4Q96JB8 637 aa13.77□□□□□ -0.2
COL6A3-202ENST00000347401 PUS7LQ9H0K6 701 aaKnown RBP13.77□□□□□ -0.2
COL6A3-202ENST00000347401 CIDEBQ9UHD4 219 aa13.77□□□□□ -0.2
COL6A3-202ENST00000347401 MAGED2Q9UNF1 606 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-202ENST00000347401 RPLP2P05387 115 aaKnown RBP13.77□□□□□ -0.2
COL6A3-202ENST00000347401 COILP38432 576 aaPredicted RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms