RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ZNF263O14978 683 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 NUDT21O43809 227 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 DPM1O60762 260 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 NR1I2O75469 434 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 VNN1O95497 513 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 POMCP01189 267 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PENKP01210 267 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ACRP10323 421 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CYP2C9P11712 490 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ATF2P15336 505 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF8P17098 575 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 UBA1P22314 1058 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 EPHA8P29322 1005 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CORO1AP31146 461 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CHRNA3P32297 505 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 GNAQP50148 359 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PEX5P50542 639 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 RNF144AP50876 292 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 TLE4Q04727 773 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 HIC1Q14526 733 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 LACTB2Q53H82 288 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 METTL24Q5JXM2 366 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CNNM4Q6P4Q7 775 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 BORAQ6PGQ7 559 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 FOXR2Q6PJQ5 311 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CASC1Q6TDU7 716 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 NCCRP1Q6ZVX7 275 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 DPH6Q7L8W6 267 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 FAM228AQ86W67 206 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 GLYCTKQ8IVS8 523 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 GPALPP1Q8IXQ4 340 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 EXD3Q8N9H8 876 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 WDR36Q8NI36 951 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PPP1R10Q96QC0 940 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZCWPW1Q9H0M4 648 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF768Q9H5H4 540 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 TUT1Q9H6E5 874 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 RTEL1Q9NZ71 1219 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 FBXL21Q9UKT6 434 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 SLC8A2Q9UPR5 921 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CDY2AQ9Y6F7 541 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CNOT1A5YKK6 2376 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 SPTBN4Q9H254 2564 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 GSTTP1A0A1W2PQM5 241 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 H0YCG3 227 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 TRAPPC3O43617 180 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 BUB1O43683 1085 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 ACTN4O43707 911 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 NOBOXO60393 691 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 KCNJ13O60928 360 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 FURINP09958 794 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CALM1P0DP23 149 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CALM2P0DP24 149 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CALM3P0DP25 149 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 ATF4P18848 351 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 NDST2P52849 883 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 COPAP53621 1224 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 MFAP1P55081 439 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 NXPH1P58417 271 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 RACK1P63244 317 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 SPEM2Q0P670 501 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 TUSC3Q13454 348 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 MTMR1Q13613 665 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 SOWAHAQ2M3V2 549 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 PDLIM3Q53GG5 364 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 GPR158Q5T848 1215 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 ZCCHC8Q6NZY4 707 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 KYAT3Q6YP21 454 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 RNF207Q6ZRF8 634 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 TPRG1Q6ZUI0 275 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 OTOP2Q7RTS6 562 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC84Q86UT8 332 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 RBM12BQ8IXT5 1001 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CBARPQ8N350 705 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 FSTL5Q8N475 847 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 PLA2G15Q8NCC3 412 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 KCNE4Q8WWG9 221 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 TAF4BQ92750 862 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 GLMNQ92990 594 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 COX4I2Q96KJ9 171 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 SLC46A1Q96NT5 459 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 TMEM209Q96SK2 561 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 DHRS4Q9BTZ2 278 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 KMT5AQ9NQR1 393 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 SCHIP1Q9P0W5 487 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 ZBTB4Q9P1Z0 1013 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 BARX2Q9UMQ3 279 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 WBP11Q9Y2W2 641 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 PKHD1P08F94 4074 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 FAM208BQ5VWN6 2430 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 CEP250Q9BV73 2442 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 LY6G6EA0A0G2JKS1 128 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 FAM47E-STBD1D6RA91 191 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 PPP1R12AO14974 1030 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 HTRA2O43464 458 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 EEF2P13639 858 aaKnown RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 LPOP22079 712 aaPredicted RBP1.74□□□□□ -2.13
LINC00643-201ENST00000334389 KRTAP5-9P26371 169 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 ITPKBP27987 946 aa1.74□□□□□ -2.13
LINC00643-201ENST00000334389 GPC3P51654 580 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms