RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HEXIM2Q96MH2 286 aaKnown RBP16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 KREMEN1Q96MU8 473 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 KRT82Q9NSB4 513 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 APEX2Q9UBZ4 518 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 USTQ9Y2C2 406 aa16.88■□□□□ 0.29
CCDC28A-201ENST00000332797 C19orf67A6NJJ6 358 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 F8VP50 259 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 AP1G2O75843 785 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 CCR2P41597 374 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 FKBP15Q5T1M5 1219 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 PAQR9Q6ZVX9 377 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 TMC8Q8IU68 726 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 LEMD2Q8NC56 503 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 CYFIP2Q96F07 1278 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 MYADMQ96S97 322 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 ZNF334Q9HCZ1 680 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 SIX2Q9NPC8 291 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 AVENQ9NQS1 362 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 TMEM30AQ9NV96 361 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 MAGED2Q9UNF1 606 aaPredicted RBP16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 DOCK6Q96HP0 2047 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 VCANP13611 3396 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 NOTCH4Q99466 2003 aa16.87■□□□□ 0.29
CCDC28A-201ENST00000332797 SLC38A8A6NNN8 435 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 ZNF197O14709 1029 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CAVIN2O95810 425 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CSH1P0DML2 217 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CSH2P0DML3 217 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CEBPBP17676 345 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 EPHA5P54756 1037 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 MFAP3P55082 362 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 MTMR3Q13615 1198 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 ARHGAP44Q17R89 818 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 PRSS36Q5K4E3 855 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 ENOSF1Q7L5Y1 443 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 LUZP1Q86V48 1076 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 GJD3Q8N144 294 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 SPATA17Q96L03 361 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 C8orf48Q96LL4 319 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 HNRNPABQ99729 332 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 LSM14BQ9BX40 385 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 LRRC3Q9BY71 257 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 DMAP1Q9NPF5 467 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 LGALS16A8MUM7 142 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 NRG2O14511 850 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 FAM200BP0CF97 657 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 KRT5P13647 590 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CD19P15391 556 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 GJA1P17302 382 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 TPM4P67936 248 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 KCNMA1Q12791 1236 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 PPP1R26Q5T8A7 1209 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 RBBP8NLQ8NC74 664 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 SHKBP1Q8TBC3 707 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 FGF13Q92913 245 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 FAM81BQ96LP2 452 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 KCNK16Q96T55 309 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 TSPY26PQ9H489 355 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CD320Q9NPF0 282 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 CDH7Q9ULB5 785 aa16.86■□□□□ 0.29
CCDC28A-201ENST00000332797 A0A1W2PRU2 124 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 NOL4O94818 638 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 FGF19O95750 216 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 HMGA1P17096 107 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 GABRR2P28476 465 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 SGO2Q562F6 1265 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 LRSAM1Q6UWE0 723 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 DENND5BQ6ZUT9 1274 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 APTXQ7Z2E3 356 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 NPAS3Q8IXF0 933 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 PLCD3Q8N3E9 789 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 JAKMIP2Q96AA8 810 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 GCNAQ96QF7 691 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 SMOQ99835 787 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 COL25A1Q9BXS0 654 aaPredicted RBP16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 ATXN3LQ9H3M9 355 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 DNAJC12Q9UKB3 198 aa16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 AJAP1Q9UKB5 411 aaPredicted RBP16.85■□□□□ 0.29
CCDC28A-201ENST00000332797 LRRC10BA6NIK2 292 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 GOLGA6L19H0YKK7 550 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 RNF225M0QZC1 329 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 MOSPD3O75425 235 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 BEST1O76090 585 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 PAEPP09466 180 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 VDRP11473 427 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 LAMP2P13473 410 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 USP8P40818 1118 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 KLK7P49862 253 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 MAP3K7CLP57077 242 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 UBXN1Q04323 297 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 IFRD2Q12894 506 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 TEAD2Q15562 447 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 ARHGAP17Q68EM7 881 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 GAREM2Q75VX8 874 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 ZDHHC14Q8IZN3 488 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 MCRS1Q96EZ8 462 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 CEP295NLQ96MC4 621 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 IL21Q9HBE4 155 aa16.84■□□□□ 0.29
CCDC28A-201ENST00000332797 EPS15L1Q9UBC2 864 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms