RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RIBC1Q8N443 379 aaPredicted RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 BORCS6Q96GS4 357 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 ZNF333Q96JL9 665 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 FAM213AQ9BRX8 229 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 CDC42EP4Q9H3Q1 356 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 XPNPEP3Q9NQH7 507 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 CLIC5Q9NZA1 410 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 TRAF3IP3Q9Y228 551 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 ASTN1O14525 1302 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 FOXO6A8MYZ6 492 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 PHF2O75151 1096 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 GJB6O95452 261 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 SERPINB6P35237 376 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 RPL21P46778 160 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 EFNA5P52803 228 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 AP2B1P63010 937 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 DSG1Q02413 1049 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 GRAMD1BQ3KR37 738 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 SGO2Q562F6 1265 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 SPDYCQ5MJ68 293 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 C1orf146Q5VVC0 180 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 NLRP9Q7RTR0 991 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 ZNF571Q7Z3V5 609 aaPredicted RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 GLYCTKQ8IVS8 523 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 CATSPER2Q96P56 530 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 TARS2Q9BW92 718 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 FGFBP2Q9BYJ0 223 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 WDR90Q96KV7 1748 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 RRN3P2A6NIE6 340 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 PRKCBP05771 671 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 KHDC1Q4VXA5 237 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 TMEM63BQ5T3F8 832 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 SLFN12LQ6IEE8 588 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 PLPPR4Q7Z2D5 763 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 MTDHQ86UE4 582 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 PPTC7Q8NI37 304 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 SLC35G2Q8TBE7 412 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 LZICQ8WZA0 190 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 HHIPL1Q96JK4 782 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 APOL6Q9BWW8 343 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 MRPL4Q9BYD3 311 aaKnown RBP11.43□□□□□ -0.58
LSM3-201ENST00000306024 TBX20Q9UMR3 447 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 ZNF232Q9UNY5 417 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 ASB3Q9Y575 518 aa11.43□□□□□ -0.58
LSM3-201ENST00000306024 GPR25O00155 361 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 GAS2O43903 313 aaKnown RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 CDH16O75309 829 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 SLC9A1P19634 815 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CPA2P48052 419 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 ADARP55265 1226 aaKnown RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 NLRP11P59045 1033 aaKnown RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 GRIK4Q16099 956 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 LIN52Q52LA3 116 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 KLC3Q6P597 504 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 HIPK4Q8NE63 616 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 GSDMBQ8TAX9 411 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 PIP4K2CQ8TBX8 421 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 RFFLQ8WZ73 363 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 OSGEPQ9NPF4 335 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 AGPAT3Q9NRZ7 376 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 GABRQQ9UN88 632 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 MAFBQ9Y5Q3 323 aaPredicted RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 MAP3K13O43283 966 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CSDE1O75534 798 aaKnown RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 VTNP04004 478 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 TRIM49P0CI25 452 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 TRIM49CP0CI26 452 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 ARHGAP1Q07960 439 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CBX3Q13185 183 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 ZNF568Q3ZCX4 644 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 GALNTL6Q49A17 601 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CXCL17Q6UXB2 119 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 RNF180Q86T96 592 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 C4orf33Q8N1A6 199 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 PTPRN2Q92932 1015 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 C9orf72Q96LT7 481 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 TRIM55Q9BYV6 548 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 RNPEPQ9H4A4 650 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 USP20Q9Y2K6 914 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 IKBKGQ9Y6K9 419 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 HNRNPCL1O60812 293 aaKnown RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 DNAJC6O75061 913 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 LYNP07948 512 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 NAMPTP43490 491 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CCNG1P51959 295 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 TRPC3Q13507 836 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 WDR44Q5JSH3 913 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 DUPD1Q68J44 220 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 CDR2LQ86X02 465 aaPredicted RBP11.42□□□□□ -0.58
LSM3-201ENST00000306024 RNF169Q8NCN4 708 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 ETNK2Q9NVF9 386 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 RNF186Q9NXI6 227 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 HSPBP1Q9NZL4 362 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 GCNT4Q9P109 453 aa11.42□□□□□ -0.58
LSM3-201ENST00000306024 MYH15Q9Y2K3 1946 aa11.41□□□□□ -0.58
LSM3-201ENST00000306024 PSMG1O95456 288 aa11.41□□□□□ -0.58
LSM3-201ENST00000306024 KRT19P08727 400 aa11.41□□□□□ -0.58
LSM3-201ENST00000306024 UCHL3P15374 230 aa11.41□□□□□ -0.58
LSM3-201ENST00000306024 GNAZP19086 355 aa11.41□□□□□ -0.58
LSM3-201ENST00000306024 MTA1Q13330 715 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms