RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GBP1P32455 592 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 MYO1EQ12965 1108 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 MAPRE1Q15691 268 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 SDHAF4Q5VUM1 108 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 LARP1BQ659C4 914 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 DPH6Q7L8W6 267 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 ADGRF2Q8IZF7 708 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 CSGALNACT2Q8N6G5 542 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 SH3RF2Q8TEC5 729 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 PKMYT1Q99640 499 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 STRA6Q9BX79 667 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 GTF3C4Q9UKN8 822 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 ARHGAP26Q9UNA1 814 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 WNT6Q9Y6F9 365 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 HELZP42694 1942 aaKnown RBP15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 GABRDO14764 452 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 KHNYNO15037 678 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 PROS1P07225 676 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 HDCP19113 662 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 TXLNAP40222 546 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 NOVA1P51513 510 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 PMS2CLQ68D20 193 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 VSTM1Q6UX27 236 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 DYMQ7RTS9 669 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 SCN4BQ8IWT1 228 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 SYCP3Q8IZU3 236 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 ARL14EPQ8N8R7 260 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 STKLD1Q8NE28 680 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 TTC16Q8NEE8 873 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 USP33Q8TEY7 942 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 SPATA17Q96L03 361 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 CYP2S1Q96SQ9 504 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 TMEM9BQ9NQ34 198 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 OLFML3Q9NRN5 406 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 POLR3BQ9NW08 1133 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 GCNT4Q9P109 453 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 SNX9Q9Y5X1 595 aa15.83■□□□□ 0.12
CCDC88B-201ENST00000301897 ZFYVE26Q68DK2 2539 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 C4orf47A7E2U8 309 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 TULP1O00294 542 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 SLC9A3R1O14745 358 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 DCLK1O15075 740 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 KIAA0391O15091 583 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 ALDH1A2O94788 518 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 GCNT3O95395 438 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 KRT19P08727 400 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 TMEM191BP0C7N4 346 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 ACAT1P24752 427 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 PPP3CCP48454 512 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 GRIN1Q05586 938 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 SF3A1Q15459 793 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 C8orf34Q49A92 452 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 HSF5Q4G112 596 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 NAIF1Q69YI7 327 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 TCEAL6Q6IPX3 200 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 FAM171BQ6P995 826 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 SV2BQ7L1I2 683 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 CYP2U1Q7Z449 544 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 TCEAL3Q969E4 200 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 SAAL1Q96ER3 474 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 ANKRD36BP1Q96IX9 119 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 CNOT6LQ96LI5 555 aaKnown RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 SLC22A12Q96S37 553 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 TRPM5Q9NZQ8 1165 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 MAGEC2Q9UBF1 373 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 CDH9Q9ULB4 789 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 MMP17Q9ULZ9 603 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 GON4LQ3T8J9 2241 aa15.82■□□□□ 0.12
CCDC88B-201ENST00000301897 ZZEF1O43149 2961 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 LNP1A1A4G5 178 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 C2orf78A6NCI8 922 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 CEACAM1P13688 526 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 CSRP1P21291 193 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 ANXA13P27216 316 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 DPP6P42658 865 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 MRPS21P82921 87 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 RRAGBQ5VZM2 374 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 LMBRD2Q68DH5 695 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 RASSF3Q86WH2 238 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 CXorf38Q8TB03 319 aa15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 EZH1Q92800 747 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-201ENST00000301897 TMEM8BA6NDV4 472 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 MYMKA6NI61 221 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 TRIM66O15016 1216 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 TNNC2P02585 160 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 EIF2DP41214 584 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 KCNA1Q09470 495 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 ZNF252P-AS1Q0IIN9 211 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 BYSLQ13895 437 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 SURF1Q15526 300 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 SOWAHAQ2M3V2 549 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 C2orf27AQ580R0 203 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 DENND5BQ6ZUT9 1274 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 LIMS2Q7Z4I7 341 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 OSTM1Q86WC4 334 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 DDX42Q86XP3 938 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 DNAJC19Q96DA6 116 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 EPSTI1Q96J88 318 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 SPACA7Q96KW9 195 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms